Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 4.9e-100 367.9 193 100.0
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 5.0e-68 261.5 200 72.0
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 1.1e-62 243.8 199 68.3
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 3.1e-62 242.3 197 70.6
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 4.1e-62 241.9 203 67.0
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 5.3e-62 241.5 194 66.5
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 4.5e-61 238.4 200 64.0
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 9.4e-59 230.7 201 65.7
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 4.7e-58 228.4 202 67.3
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 2.0e-56 223.0 206 62.1
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.3e-56 222.2 196 65.8
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 2.2e-55 219.5 203 63.5
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.4e-54 216.9 201 62.2
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.6e-53 213.4 193 64.2
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 4.5e-53 211.8 204 62.3
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 1.1e-51 207.2 197 59.9
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.5e-51 206.8 199 61.8
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 3.2e-51 205.7 211 62.1
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 8.0e-50 201.1 194 62.4
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.0e-49 200.7 196 63.8
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 2.3e-49 199.5 224 58.5
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 4.0e-49 198.7 225 53.8
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.5e-48 196.8 201 61.7
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 5.7e-48 194.9 205 58.5
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.7e-47 193.4 202 56.9
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.7e-47 193.4 202 56.9
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 6.3e-47 191.4 198 54.5
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 8.3e-47 191.0 199 54.8
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.4e-46 190.3 207 56.5
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 1.4e-46 190.3 213 56.3
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 2.4e-46 189.5 200 58.5
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 9.1e-46 187.6 203 55.7
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 2.7e-45 186.0 198 57.1
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 3.5e-45 185.7 162 61.1
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 3.5e-45 185.7 211 55.9
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 4.5e-45 185.3 210 56.7
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 3.8e-44 182.2 199 56.3
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 8.5e-44 181.0 202 55.4
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.5e-43 180.3 208 55.3
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.5e-43 180.3 201 59.7
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 5.5e-43 178.3 192 56.2
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 7.2e-43 177.9 204 55.9
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.2e-42 177.2 191 59.7
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.6e-42 176.8 216 53.7
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 2.1e-42 176.4 201 56.7
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 3.6e-42 175.6 200 54.5
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.4e-41 173.7 202 55.0
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.8e-41 173.3 196 53.6
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 4.0e-41 172.2 203 53.7
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 6.8e-41 171.4 203 55.2
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 1.2e-40 170.6 200 54.0
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.2e-40 170.6 197 53.8
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 3.4e-40 169.1 205 51.2
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.7e-40 168.3 208 53.4
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 7.5e-40 167.9 210 54.3
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 3.7e-39 165.6 201 54.2
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.4e-38 163.7 209 48.8
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.4e-38 163.7 202 55.0
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 7.0e-38 161.4 203 51.7
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.2e-37 160.6 207 48.8
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 3.5e-37 159.1 203 57.1
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 3.5e-37 159.1 208 51.4
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.7e-36 156.8 208 51.0
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 6.6e-36 154.8 207 50.7
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.6e-36 154.5 212 51.9
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.5e-35 153.7 202 47.0
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 1.9e-35 153.3 212 52.4
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.9e-35 153.3 213 52.1
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.3e-35 152.5 214 51.4
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 4.2e-35 152.1 202 50.5
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.5e-35 151.8 223 50.7
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.2e-34 150.6 210 47.6
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.6e-34 150.2 203 47.3
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.1e-34 149.8 210 48.6
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 2.8e-34 149.4 200 46.0
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.6e-34 149.1 210 49.5
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 4.7e-34 148.7 200 46.0
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 6.1e-34 148.3 200 45.5
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 8.0e-34 147.9 209 48.8
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.8e-33 146.7 203 46.3
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 3.0e-33 146.0 206 47.1
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 4.0e-33 145.6 202 45.0
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 4.0e-33 145.6 202 45.0
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 4.0e-33 145.6 202 45.0
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 5.2e-33 145.2 206 46.6
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 5.2e-33 145.2 206 46.6
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 8.9e-33 144.4 204 49.5
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 8.9e-33 144.4 202 44.6
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 2.6e-32 142.9 138 63.0
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 2.6e-32 142.9 212 47.2
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.6e-32 142.9 202 46.0
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 3.4e-32 142.5 213 46.5
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 4.4e-32 142.1 206 46.1
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 4.4e-32 142.1 206 46.1
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 4.4e-32 142.1 132 62.9
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.7e-32 141.7 222 48.6
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 5.7e-32 141.7 197 50.8
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.8e-31 139.4 203 48.3
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 4.9e-31 138.7 175 48.6
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 4.9e-31 138.7 203 48.8
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 6.3e-31 138.3 209 46.9
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.1e-30 137.5 203 44.8
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.8e-30 136.7 215 46.5
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 2.4e-30 136.3 201 46.8
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 4.1e-30 135.6 218 45.4
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 4.1e-30 135.6 174 54.6
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 5.4e-30 135.2 179 45.3
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 7.0e-30 134.8 208 46.6
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 2.7e-29 132.9 197 42.1
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 2.7e-29 132.9 166 54.2
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 4.6e-29 132.1 210 44.8
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 5.9e-29 131.7 197 46.2
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 2.3e-28 129.8 206 45.1
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 3.9e-28 129.0 113 61.9
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 8.6e-28 127.9 185 46.5
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 8.6e-28 127.9 197 45.2
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 2.5e-27 126.3 187 46.5
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 3.3e-27 125.9 208 46.2
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 3.3e-27 125.9 164 47.0
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 3.3e-27 125.9 204 46.1
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 1.2e-26 124.0 203 45.3
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.6e-26 123.6 181 48.6
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 1.6e-26 123.6 199 46.2
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 8.0e-26 121.3 167 45.5
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.0e-25 120.9 143 51.7
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.4e-25 120.6 198 42.4
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 1.5e-24 117.1 195 44.1
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 4.4e-24 115.5 209 45.0
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.3e-23 114.0 185 43.8
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.7e-23 113.6 145 48.3
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.7e-23 113.6 191 44.5
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 4.9e-23 112.1 212 40.6
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.9e-22 110.2 147 48.3
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.4e-22 109.8 194 40.7
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 2.4e-22 109.8 208 40.9
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 5.4e-22 108.6 213 42.7
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 5.4e-22 108.6 213 42.7
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 7.0e-22 108.2 212 40.1
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 7.0e-22 108.2 166 45.8
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.5e-21 105.9 210 41.9
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 7.8e-21 104.8 191 39.8
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 2.3e-20 103.2 191 40.8
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 5.0e-20 102.1 120 49.2
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 5.0e-20 102.1 217 41.5
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.1e-19 100.9 204 41.2
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 1.1e-19 100.9 203 40.4
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.5e-19 100.5 206 37.9
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.2e-18 97.4 196 40.8
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.1e-18 96.7 201 45.3
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.8e-18 96.3 201 42.8
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 3.6e-18 95.9 138 47.1
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 6.8e-17 91.7 199 42.2
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 8.9e-17 91.3 210 41.9
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.5e-16 90.5 202 37.1
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 5.8e-16 88.6 207 39.1
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 5.8e-16 88.6 211 39.8
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 7.5e-16 88.2 90 57.8
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 9.8e-16 87.8 103 55.3
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 5.4e-14 82.0 120 46.7
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 1.2e-13 80.9 128 43.8
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 2.1e-13 80.1 201 36.8
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 2.1e-13 80.1 202 35.1
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 3.5e-13 79.3 119 47.1
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.3e-12 77.4 117 43.6
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 1.7e-12 77.0 118 46.6
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 3.0e-12 76.3 128 43.8
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 3.0e-12 76.3 161 40.4
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 3.0e-12 76.3 203 32.0
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 4.3e-11 72.4 213 37.1
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 4.7e-10 68.9 207 33.8
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 1.1e-09 67.8 219 35.6
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 1.4e-09 67.4 97 45.4
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 1.4e-09 67.4 98 45.9
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 2.3e-09 66.6 202 36.1
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.2e-08 64.3 159 35.8
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 3.7e-07 59.3 60 53.3
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 3.7e-07 59.3 201 31.8
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 3.7e-07 59.3 190 33.2
HPP92_024624 Vanilla planifolia HOM05D003644 ORTHO05D004305 4.9e-07 58.9 195 33.3
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.4e-06 56.6 73 52.1
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 2.4e-06 56.6 123 38.2


User provided reference genes

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