Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc23.157 Carica papaya HOM05D003720 ORTHO05D005312 0.0e+00 1614.4 832 100.0
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 0.0e+00 1299.6 803 84.2
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 0.0e+00 1292.3 794 84.0
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 0.0e+00 1285.8 805 83.4
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 0.0e+00 1284.6 807 83.0
COL.COLO4_34941 Corchorus olitorius HOM05D003720 ORTHO05D005312 0.0e+00 1282.7 815 82.5
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 0.0e+00 1281.5 803 83.2
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 0.0e+00 1280.4 804 82.8
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 1280.4 806 82.9
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 0.0e+00 1280.4 807 83.4
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 1280.0 806 82.8
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 0.0e+00 1276.5 819 81.6
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 1275.8 804 82.6
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 1273.8 805 82.5
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 1272.7 805 82.7
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 0.0e+00 1272.7 803 83.2
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 0.0e+00 1270.4 806 82.4
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 0.0e+00 1268.4 806 82.5
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 0.0e+00 1266.9 806 82.6
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 0.0e+00 1265.8 790 83.7
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 0.0e+00 1265.4 807 82.0
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 0.0e+00 1264.2 807 82.2
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 0.0e+00 1261.5 819 81.1
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 0.0e+00 1261.1 819 80.7
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 0.0e+00 1260.7 807 81.9
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 0.0e+00 1252.7 807 81.3
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 0.0e+00 1248.8 802 81.3
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 0.0e+00 1248.0 816 81.2
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 0.0e+00 1248.0 816 81.2
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 1238.8 802 80.5
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 0.0e+00 1237.2 804 80.6
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 1236.5 804 80.3
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 0.0e+00 1235.3 804 80.5
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 0.0e+00 1234.6 803 80.9
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 0.0e+00 1234.2 803 80.9
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 0.0e+00 1233.8 804 81.7
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 0.0e+00 1233.0 806 80.8
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 0.0e+00 1232.6 806 80.0
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 0.0e+00 1230.7 808 79.7
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 0.0e+00 1229.9 803 80.0
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 0.0e+00 1228.4 781 82.1
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 0.0e+00 1226.1 810 79.3
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 0.0e+00 1224.2 803 80.3
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 0.0e+00 1223.4 800 80.2
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 1222.2 800 80.8
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 0.0e+00 1221.8 793 80.2
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 0.0e+00 1221.8 793 80.5
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 0.0e+00 1220.3 802 79.4
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 0.0e+00 1217.6 793 79.8
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 1214.5 799 80.2
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 0.0e+00 1212.6 828 77.5
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 0.0e+00 1208.7 792 79.8
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 0.0e+00 1207.2 805 79.4
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 0.0e+00 1206.8 817 77.1
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 0.0e+00 1206.4 807 79.6
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 0.0e+00 1205.3 801 78.7
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 0.0e+00 1204.5 847 76.4
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 0.0e+00 1203.7 787 81.2
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 0.0e+00 1203.0 781 81.2
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 0.0e+00 1200.7 816 78.2
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 0.0e+00 1191.8 815 77.2
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 0.0e+00 1189.9 778 79.9
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 0.0e+00 1189.5 778 79.3
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 0.0e+00 1186.4 798 78.3
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 0.0e+00 1177.2 803 77.0
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 0.0e+00 1177.2 802 77.2
Nitab4.5_0000237g0010 Nicotiana tabacum HOM05D003720 ORTHO05D005312 0.0e+00 1174.8 801 77.8
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 0.0e+00 1167.9 805 76.8
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 1167.5 802 76.4
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 0.0e+00 1165.6 805 76.9
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 0.0e+00 1162.9 805 76.5
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 0.0e+00 1160.6 805 76.5
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 0.0e+00 1160.2 802 77.3
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 0.0e+00 1156.0 802 75.7
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 0.0e+00 1155.6 783 77.5
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 0.0e+00 1152.9 799 75.7
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 0.0e+00 1151.0 783 77.3
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 0.0e+00 1147.9 788 76.3
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 0.0e+00 1147.5 785 76.7
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 0.0e+00 1144.4 784 77.0
Sp4g08590 Schrenkiella parvula HOM05D003720 ORTHO05D005312 0.0e+00 1142.5 785 76.6
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 0.0e+00 1140.6 786 76.5
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 0.0e+00 1140.2 786 76.5
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 0.0e+00 1139.4 783 76.8
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 0.0e+00 1137.9 799 76.2
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 0.0e+00 1133.6 780 76.3
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 0.0e+00 1132.1 784 76.4
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 0.0e+00 1128.6 808 74.1
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 0.0e+00 1127.1 792 75.1
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 0.0e+00 1125.2 794 75.4
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 0.0e+00 1121.3 800 75.4
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 0.0e+00 1119.8 791 76.1
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 0.0e+00 1118.2 834 71.7
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 0.0e+00 1115.9 836 72.7
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 0.0e+00 1112.1 803 72.2
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 0.0e+00 1096.6 734 78.9
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 0.0e+00 1095.1 804 72.4
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 0.0e+00 1092.8 797 73.0
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 0.0e+00 1087.4 819 71.7
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 0.0e+00 1075.5 805 70.6
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 5.7e-312 1073.9 808 71.7
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 1.5e-310 1069.3 758 74.8
Nitab4.5_0002116g0030 Nicotiana tabacum HOM05D003720 ORTHO05D005312 2.0e-307 1058.9 713 78.1
Hund12706 Selenicereus undatus HOM05D003720 ORTHO05D005312 2.4e-305 1052.0 711 77.8
CDE06G2493 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 3.9e-295 1018.1 783 70.0
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 5.1e-287 991.1 672 77.5
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 5.3e-284 981.1 794 64.5
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 6.5e-282 974.2 812 64.7
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 2.5e-281 972.2 793 66.0
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 6.5e-266 921.0 819 60.7
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 6.7e-263 911.0 693 71.3
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 1.8e-260 902.9 810 60.6
CDE07G0361 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 3.1e-236 822.4 631 69.4
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 6.6e-194 681.8 754 53.2
Atru.chr7.1285 Acer truncatum HOM05D003720 ORTHO05D005312 1.2e-182 644.4 377 89.7
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 3.4e-174 616.3 409 78.0
FAN23G1240 Fragaria x ananassa HOM05D003720 ORTHO05D005312 9.9e-81 305.8 228 71.9
Cre12.g486209 Chlamydomonas reinhardtii HOM05D003720 ORTHO05D005312 5.3e-66 256.9 986 26.8
CDE07G0366 Ceratophyllum demersum HOM05D003720 ORTHO05D017820 2.2e-64 251.5 146 87.0
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 9.6e-60 236.1 784 28.8
Peaxi162Scf00256g00812 Petunia axillaris HOM05D003720 ORTHO05D017820 8.8e-37 159.8 109 79.8
Nitab4.5_0002116g0020 Nicotiana tabacum HOM05D003720 ORTHO05D017820 3.3e-28 131.3 90 77.8
unitig_22.g6633 Utricularia gibba HOM05D003720 ORTHO05D017820 2.8e-27 128.3 84 77.4
SHI03184 Sapria himalayana HOM05D003720 ORTHO05D005312 2.8e-19 101.7 90 62.2
Dinv41561 Davidia involucrata HOM05D003720 ORTHO05D017820 5.0e-16 90.9 80 60.0
TAR374G0606 Trochodendron aralioides HOM05D003720 ORTHO05D017820 4.7e-14 84.3 68 69.1
Lsat_1_v5_gn_7_20540 Lactuca sativa HOM05D003720 ORTHO05D007744 9.2e-10 70.1 43 86.0
Lsat_1_v5_gn_1_94860 Lactuca sativa HOM05D003720 ORTHO05D017820 1.6e-09 69.3 46 82.6
Pp3c3_6650 Physcomitrium patens HOM05D003720 ORTHO05D318947 1.0e-08 66.6 81 43.2
GSVIVG01034717001 Vitis vinifera HOM05D000251 ORTHO05D000414 6.6e-08 63.9 49 69.4
FvH4_5g25070 Fragaria vesca HOM05D003720 ORTHO05D196514 1.1e-07 63.2 47 74.5
FvH4_5g24770 Fragaria vesca HOM05D067251 ORTHO05D017820 3.3e-07 61.6 94 50.0


User provided reference genes

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