Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc23.151 Carica papaya HOM05D003720 ORTHO05D019489 2.6e-112 408.7 203 100.0
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 9.5e-70 267.3 206 68.4
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 2.1e-69 266.2 205 67.3
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 2.9e-66 255.8 202 67.8
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 1.9e-65 253.1 221 62.0
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 7.1e-65 251.1 223 61.9
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 1.7e-63 246.5 191 70.2
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 2.8e-61 239.2 220 57.3
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 8.1e-61 237.7 203 61.1
CDE07G1715 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 2.4e-60 236.1 183 63.4
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 6.8e-60 234.6 188 64.4
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 4.4e-59 231.9 156 76.3
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 4.4e-59 231.9 153 76.5
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 4.4e-59 231.9 136 83.8
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 2.2e-58 229.6 199 63.8
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 4.9e-58 228.4 143 79.7
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 6.4e-58 228.0 134 82.8
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 8.4e-58 227.6 133 82.7
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 8.4e-58 227.6 135 81.5
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 1.1e-57 227.3 144 77.8
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 1.1e-57 227.3 129 86.8
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 3.2e-57 225.7 140 80.0
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 4.2e-57 225.3 146 76.0
Gohir.A06G060266 Gossypium hirsutum HOM05D003720 ORTHO05D019489 4.2e-57 225.3 135 80.7
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 5.4e-57 224.9 156 73.7
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 7.1e-57 224.6 134 82.1
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 9.3e-57 224.2 148 76.4
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 9.3e-57 224.2 135 80.7
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 1.2e-56 223.8 138 79.0
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 1.2e-56 223.8 127 83.5
COL.COLO4_34940 Corchorus olitorius HOM05D003720 ORTHO05D005312 1.6e-56 223.4 149 73.8
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.6e-56 223.4 135 80.0
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 1.6e-56 223.4 135 80.0
GSVIVG01015441001 Vitis vinifera HOM05D003720 ORTHO05D005312 2.1e-56 223.0 159 71.1
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 2.7e-56 222.6 140 78.6
FAN23G2146 Fragaria x ananassa HOM05D003720 ORTHO05D005312 4.6e-56 221.9 144 75.0
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 4.6e-56 221.9 134 78.4
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 6.0e-56 221.5 133 79.7
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 1.0e-55 220.7 134 80.6
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 1.3e-55 220.3 144 75.7
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 1.3e-55 220.3 126 83.3
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 1.7e-55 219.9 157 72.0
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 2.3e-55 219.5 155 73.5
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 2.3e-55 219.5 205 58.0
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 3.0e-55 219.2 127 84.3
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 3.9e-55 218.8 144 74.3
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 3.9e-55 218.8 144 74.3
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 5.1e-55 218.4 152 71.7
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 5.1e-55 218.4 152 69.1
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 6.6e-55 218.0 128 82.0
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 1.1e-54 217.2 128 81.2
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 1.1e-54 217.2 154 74.0
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 1.1e-54 217.2 155 69.0
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.5e-54 216.9 149 71.1
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 1.5e-54 216.9 127 83.5
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 1.5e-54 216.9 153 71.9
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 1.9e-54 216.5 165 67.9
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 1.9e-54 216.5 134 77.6
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 2.5e-54 216.1 126 84.1
BcaB02g10050 Brassica carinata HOM05D003720 ORTHO05D005312 3.3e-54 215.7 200 57.5
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 3.3e-54 215.7 155 67.7
SHI03186 Sapria himalayana HOM05D003720 ORTHO05D005312 4.3e-54 215.3 179 61.5
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 7.3e-54 214.5 126 83.3
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 7.3e-54 214.5 127 79.5
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 9.6e-54 214.2 127 82.7
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 9.6e-54 214.2 155 67.7
Peaxi162Scf00256g00815 Petunia axillaris HOM05D003720 ORTHO05D005312 1.3e-53 213.8 155 69.0
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 1.6e-53 213.4 161 67.1
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 1.6e-53 213.4 159 66.0
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 1.6e-53 213.4 164 65.9
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 2.1e-53 213.0 138 74.6
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 2.8e-53 212.6 146 70.5
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 3.6e-53 212.2 134 71.6
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 4.8e-53 211.8 147 72.1
Hma1.2p1_0245F.1_g101380 Hydrangea macrophylla HOM05D003720 ORTHO05D019489 4.8e-53 211.8 127 78.7
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 4.8e-53 211.8 144 73.6
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 6.9e-52 208.0 135 71.1
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 1.5e-51 206.8 137 72.3
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 4.4e-51 205.3 146 67.1
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 1.7e-50 203.4 137 71.5
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 4.9e-50 201.8 143 65.7
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 4.9e-50 201.8 124 78.2
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 1.4e-49 200.3 145 68.3
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 2.4e-49 199.5 126 76.2
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 3.2e-49 199.1 132 70.5
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 3.2e-49 199.1 132 70.5
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 3.2e-49 199.1 126 76.2
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 7.1e-49 198.0 124 76.6
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 3.5e-48 195.7 135 70.4
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 3.5e-48 195.7 146 69.2
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 4.6e-48 195.3 130 71.5
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 6.0e-48 194.9 132 69.7
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 1.0e-47 194.1 132 69.7
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 1.0e-47 194.1 132 69.7
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 3.9e-47 192.2 167 64.1
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 2.5e-46 189.5 117 76.9
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 9.9e-43 177.6 141 63.1
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 8.4e-42 174.5 170 55.9
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 3.0e-39 166.0 143 59.4
Actinidia27747 Actinidia chinensis HOM05D003720 ORTHO05D019489 8.7e-39 164.5 157 58.0
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 9.6e-38 161.0 138 57.2
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 3.7e-37 159.1 130 60.0
HPP92_014852 Vanilla planifolia HOM05D003720 ORTHO05D005312 4.8e-37 158.7 145 58.6
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 4.0e-36 155.6 139 57.6
Zm00001eb024320 Zea mays HOM05D003720 ORTHO05D019489 6.9e-36 154.8 152 53.3
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 5.8e-35 151.8 121 66.9
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 9.0e-28 127.9 198 38.4
Zm00001eb383750 Zea mays HOM05D003720 ORTHO05D019489 1.3e-18 97.4 102 49.0
AL552U10010 Arabidopsis lyrata HOM05D003720 ORTHO05D019489 1.2e-16 90.9 62 72.6
Cre12.g486209 Chlamydomonas reinhardtii HOM05D003720 ORTHO05D005312 4.3e-14 82.4 110 39.1
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 1.8e-07 60.5 105 38.1


User provided reference genes

Program Settings