Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc227.8 Carica papaya HOM05D008363 ORTHO05D010508 1.1e-133 479.9 238 100.0
Thecc.03G227000 Theobroma cacao HOM05D008363 ORTHO05D010508 4.0e-75 285.4 218 63.3
Duzib205G1194 Durio zibethinus HOM05D008363 ORTHO05D010508 8.3e-73 277.7 223 60.1
Prupe.5G035100 Prunus persica HOM05D008363 ORTHO05D010508 5.4e-72 275.0 200 67.0
TWI60G0018 Tripterygium wilfordii HOM05D008363 ORTHO05D010508 3.5e-71 272.3 192 70.8
Duzib084G1116 Durio zibethinus HOM05D008363 ORTHO05D010508 6.6e-70 268.1 215 61.4
Gohir.A03G000300 Gossypium hirsutum HOM05D008363 ORTHO05D010508 2.5e-69 266.2 220 57.7
Gohir.D03G171900 Gossypium hirsutum HOM05D008363 ORTHO05D010508 3.3e-69 265.8 225 57.3
COL.COLO4_17025 Corchorus olitorius HOM05D008363 ORTHO05D010508 6.8e-67 258.1 198 63.6
FAN18G1001 Fragaria x ananassa HOM05D008363 ORTHO05D010508 3.7e-65 252.3 217 57.6
RcHm_v2.0_Chr7g0209801 Rosa chinensis HOM05D008363 ORTHO05D010508 6.3e-65 251.5 222 56.8
FvH4_5g22141 Fragaria vesca HOM05D008363 ORTHO05D010508 8.3e-65 251.1 217 57.1
FAN08G0799 Fragaria x ananassa HOM05D008363 ORTHO05D010508 2.4e-64 249.6 217 57.1
FAN13G1991 Fragaria x ananassa HOM05D008363 ORTHO05D010508 3.1e-64 249.2 217 56.7
TAR636G2722 Trochodendron aralioides HOM05D008363 ORTHO05D010508 1.6e-63 246.9 211 55.0
FAN04G2847 Fragaria x ananassa HOM05D008363 ORTHO05D010508 2.0e-63 246.5 217 56.2
Ciclev10013884m.g Citrus clementina HOM05D008363 ORTHO05D010508 4.5e-63 245.4 179 65.4
Aqoxy5G00023 Aquilegia oxysepala HOM05D008363 ORTHO05D010508 2.9e-62 242.7 201 58.2
Actinidia14803 Actinidia chinensis HOM05D008363 ORTHO05D010508 1.9e-61 240.0 211 56.9
Dinv28961 Davidia involucrata HOM05D008363 ORTHO05D010508 4.4e-58 228.8 209 56.0
Manes.15G182300 Manihot esculenta HOM05D008363 ORTHO05D010508 1.2e-55 220.7 209 57.9
Psat2g136320 Pisum sativum HOM05D008363 ORTHO05D010508 1.2e-55 220.7 212 51.9
TAR633G2165 Trochodendron aralioides HOM05D008363 ORTHO05D010508 2.0e-55 219.9 208 54.8
PGR042G3791 Punica granatum HOM05D008363 ORTHO05D010508 9.5e-53 211.1 175 58.3
Ca_06083_v3 Cicer arietinum L. HOM05D008363 ORTHO05D010508 1.2e-52 210.7 194 53.1
Glyma.09G204700 Glycine max HOM05D008363 ORTHO05D010508 6.2e-52 208.4 189 52.9
Hma1.2p1_0303F.1_g119070 Hydrangea macrophylla HOM05D008363 ORTHO05D010508 8.0e-52 208.0 228 48.2
PGR031G1477 Punica granatum HOM05D008363 ORTHO05D010508 3.1e-51 206.1 228 50.9
CsaV3_3G001670 Cucumis sativus L. HOM05D008363 ORTHO05D010508 3.4e-50 202.6 176 54.5
CANSAT21G1194 Cannabis sativa HOM05D008363 ORTHO05D010508 2.2e-49 199.9 193 54.4
Potri.001G141900 Populus trichocarpa HOM05D008363 ORTHO05D010508 2.9e-49 199.5 208 51.0
CSS0023279 Camellia sinensis var. sinensis HOM05D008363 ORTHO05D010508 5.4e-48 195.3 217 49.3
CSS0031173 Camellia sinensis var. sinensis HOM05D008363 ORTHO05D010508 5.4e-48 195.3 217 49.3
MD16G1273800 Malus domestica HOM05D008363 ORTHO05D010508 7.8e-47 191.4 144 61.8
Manes.05G195161 Manihot esculenta HOM05D008363 ORTHO05D010508 8.6e-46 188.0 186 48.4
Cc08_g02830 Coffea canephora HOM05D008363 ORTHO05D010508 1.1e-43 181.0 210 45.2
MD06G1034800 Malus domestica HOM05D008363 ORTHO05D010508 5.2e-43 178.7 147 58.5
DCAR_024961 Daucus carota HOM05D008363 ORTHO05D010508 3.4e-42 176.0 218 43.6
Oeu006320.1 Olea europaea HOM05D008363 ORTHO05D010508 5.8e-42 175.3 195 47.2
Potri.014G146500 Populus trichocarpa HOM05D008363 ORTHO05D010508 5.8e-42 175.3 193 47.7
Migut.A01011 Erythranthe guttata HOM05D008363 ORTHO05D010508 1.3e-41 174.1 222 42.3
MBI18_g13989_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.2e-32 141.4 153 47.1
Cfa012447 Carpinus fangiana HOM05D000816 ORTHO05D010508 9.6e-29 131.3 211 40.8
Haze_08219 Corylus avellana HOM05D008363 ORTHO05D010508 2.8e-28 129.8 211 38.4
DCAR_005636 Daucus carota HOM05D008363 ORTHO05D010508 4.7e-28 129.0 207 37.2
Solyc08g076887.1 Solanum lycopersicum HOM05D008363 ORTHO05D010508 1.8e-27 127.1 131 44.3
Ciclev10023626m.g Citrus clementina HOM05D008363 ORTHO05D010508 1.9e-24 117.1 219 38.8
Lsat_1_v5_gn_6_79301 Lactuca sativa HOM05D008363 ORTHO05D010508 7.1e-24 115.2 216 33.3
Dinv25219 Davidia involucrata HOM05D008363 ORTHO05D010508 2.1e-23 113.6 211 37.9
DCAR_008265 Daucus carota HOM05D008363 ORTHO05D010508 3.0e-22 109.8 183 35.0
ECA240G1797 Erigeron canadensis HOM05D002571 ORTHO05D002868 1.9e-21 107.1 209 32.5
Duzib084G0653 Durio zibethinus HOM05D008363 ORTHO05D010508 3.6e-20 102.8 220 35.0
AagrBONN_evm.TU.Sc2ySwM_228.2886 Anthoceros agrestis HOM05D000085 ORTHO05D001756 9.3e-16 88.2 157 31.2
ClCG10G001570 Citrullus lanatus HOM05D000344 ORTHO05D003292 1.0e-14 84.7 100 46.0
MELO3C013848.2 Cucumis melo HOM05D008363 ORTHO05D010508 1.4e-11 74.3 52 59.6
Mapoly0095s0067 Marchantia polymorpha HOM05D008363 ORTHO05D010508 4.0e-11 72.8 180 27.8
SMO230G0025 Selaginella moellendorffii HOM05D001991 ORTHO05D002030 6.9e-11 72.0 161 26.7
Sed0020592 Sechium edule HOM05D000085 ORTHO05D006184 2.0e-10 70.5 181 28.7
SMO239G0014 Selaginella moellendorffii HOM05D001991 ORTHO05D002030 2.0e-10 70.5 186 26.3
Aqoxy2G00032 Aquilegia oxysepala HOM05D000085 ORTHO05D006184 3.4e-10 69.7 160 26.2
Glyma.01G018200 Glycine max HOM05D008363 ORTHO05D010508 3.4e-10 69.7 45 62.2
RcHm_v2.0_Chr6g0277981 Rosa chinensis HOM05D000085 ORTHO05D009791 5.8e-10 68.9 162 27.8
Sed0010025 Sechium edule HOM05D000085 ORTHO05D009791 7.6e-10 68.6 165 24.2
Duzib093G0943 Durio zibethinus HOM05D000085 ORTHO05D009791 1.0e-09 68.2 193 25.9
Thecc.10G132100 Theobroma cacao HOM05D000085 ORTHO05D006184 1.0e-09 68.2 211 23.7
Potri.001G224800 Populus trichocarpa HOM05D000085 ORTHO05D006184 2.9e-09 66.6 194 24.2
MD05G1010000 Malus domestica HOM05D000085 ORTHO05D009791 3.8e-09 66.2 160 27.5
MD10G1008700 Malus domestica HOM05D000085 ORTHO05D009791 4.9e-09 65.9 162 27.2
Pp3c22_14520 Physcomitrium patens HOM05D016224 ORTHO05D023076 4.9e-09 65.9 222 25.2
Prupe.8G012300 Prunus persica HOM05D008363 ORTHO05D009791 8.4e-09 65.1 166 29.5
ClCG08G006270 Citrullus lanatus HOM05D000085 ORTHO05D009791 1.1e-08 64.7 181 23.8
Prupe.8G012500 Prunus persica HOM05D000085 ORTHO05D009791 1.9e-08 63.9 162 27.2
FvH4_2g15260 Fragaria vesca HOM05D000085 ORTHO05D009791 2.5e-08 63.5 162 27.2
FAN15G3404 Fragaria x ananassa HOM05D000085 ORTHO05D009791 2.5e-08 63.5 162 27.2
Thecc.08G138000 Theobroma cacao HOM05D000085 ORTHO05D009791 2.5e-08 63.5 162 25.3
MELO3C008431.2 Cucumis melo HOM05D000085 ORTHO05D009791 3.2e-08 63.2 181 22.7
CsaV3_6G031170 Cucumis sativus L. HOM05D000085 ORTHO05D009791 3.2e-08 63.2 176 22.2
FAN27G0973 Fragaria x ananassa HOM05D000085 ORTHO05D009791 3.2e-08 63.2 162 27.2
TAR628G0721 Trochodendron aralioides HOM05D000085 ORTHO05D009791 3.2e-08 63.2 175 24.6
FAN08G2425 Fragaria x ananassa HOM05D000085 ORTHO05D011292 4.2e-08 62.8 161 26.7
Medtr5g030350 Medicago truncatula HOM05D008363 ORTHO05D010508 5.5e-08 62.4 150 32.0
Pp3c13_19300 Physcomitrium patens HOM05D026724 ORTHO05D020966 5.5e-08 62.4 161 26.1
MBI03_g20848_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D009791 7.1e-08 62.0 170 24.7
Cc10_g13260 Coffea canephora HOM05D000085 ORTHO05D009791 1.6e-07 60.8 170 24.1
Pp3c24_19020 Physcomitrium patens HOM05D026724 ORTHO05D026055 1.6e-07 60.8 173 26.0
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.7e-07 60.1 176 24.4
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 7.9e-07 58.5 188 26.1
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 7.9e-07 58.5 188 26.1
Lj4A685T34 Lonicera japonica HOM05D000085 ORTHO05D009791 1.0e-06 58.2 166 22.3
Aqoxy6G00346 Aquilegia oxysepala HOM05D000485 ORTHO05D009791 2.3e-06 57.0 159 22.0
FAN24G2618 Fragaria x ananassa HOM05D000085 ORTHO05D009791 3.0e-06 56.6 70 34.3
Pp3c17_19290 Physcomitrium patens HOM05D000085 ORTHO05D001756 5.1e-06 55.8 206 23.8
Actinidia26150 Actinidia chinensis HOM05D000085 ORTHO05D011292 6.7e-06 55.5 187 23.0
HanXRQChr09g0254091 Helianthus annuus HOM05D000085 ORTHO05D009791 6.7e-06 55.5 174 23.0
Sopen08g025470 Solanum pennellii HOM05D008363 ORTHO05D010508 8.7e-06 55.1 86 38.4


User provided reference genes

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