Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc224.6 Carica papaya HOM05D000610 ORTHO05D004774 6.5e-165 583.9 288 100.0
Ciclev10004128m.g Citrus clementina HOM05D000610 ORTHO05D004774 2.8e-123 445.7 274 80.7
Gorai.002G146400 Gossypium raimondii HOM05D000610 ORTHO05D004774 2.4e-119 432.6 268 78.7
Gohir.A01G131111 Gossypium hirsutum HOM05D000610 ORTHO05D004774 2.7e-118 429.1 268 77.6
Gohir.D01G120000 Gossypium hirsutum HOM05D000610 ORTHO05D004774 4.6e-118 428.3 268 78.0
Atru.chr1.1122 Acer truncatum HOM05D000610 ORTHO05D004774 1.7e-117 426.4 278 77.7
Thecc.05G148900 Theobroma cacao HOM05D000610 ORTHO05D004774 5.1e-117 424.9 274 77.7
MD12G1079400 Malus domestica HOM05D000610 ORTHO05D004774 1.1e-116 423.7 279 75.6
Prupe.7G058100 Prunus persica HOM05D000610 ORTHO05D004774 2.5e-116 422.5 279 75.3
Cfa016807 Carpinus fangiana HOM05D000610 ORTHO05D004774 3.3e-116 422.2 294 71.8
COL.COLO4_08235 Corchorus olitorius HOM05D000610 ORTHO05D004774 4.3e-116 421.8 280 75.4
Potri.006G049300 Populus trichocarpa HOM05D000610 ORTHO05D004774 2.8e-115 419.1 279 74.9
FAN02G4008 Fragaria x ananassa HOM05D000610 ORTHO05D004774 1.8e-114 416.4 279 73.8
FAN14G3175 Fragaria x ananassa HOM05D000610 ORTHO05D004774 2.4e-114 416.0 279 73.8
RcHm_v2.0_Chr3g0482761 Rosa chinensis HOM05D000610 ORTHO05D004774 4.0e-114 415.2 279 74.6
arahy.Tifrunner.gnm1.ann1.50CUSQ Arachis hypogaea HOM05D000610 ORTHO05D004774 6.8e-114 414.5 279 71.7
arahy.Tifrunner.gnm1.ann1.624G49 Arachis hypogaea HOM05D000610 ORTHO05D004774 6.8e-114 414.5 279 71.7
arahy.Tifrunner.gnm1.ann1.LF6SQW Arachis hypogaea HOM05D000610 ORTHO05D004774 6.8e-114 414.5 268 73.5
Haze_19840 Corylus avellana HOM05D000610 ORTHO05D004774 1.5e-113 413.3 274 75.2
FAN09G1277 Fragaria x ananassa HOM05D000610 ORTHO05D004774 1.5e-113 413.3 279 73.8
PGR004G2234 Punica granatum HOM05D000610 ORTHO05D004774 2.0e-113 412.9 273 74.7
GSVIVG01033258001 Vitis vinifera HOM05D000610 ORTHO05D004774 2.0e-113 412.9 275 74.5
Psat3g072960 Pisum sativum HOM05D000610 ORTHO05D004774 5.8e-113 411.4 279 72.8
Aqoxy1G00231 Aquilegia oxysepala HOM05D000610 ORTHO05D004774 7.6e-113 411.0 279 74.9
Dinv18665 Davidia involucrata HOM05D000610 ORTHO05D004774 1.3e-112 410.2 280 74.3
CSS0013319 Camellia sinensis var. sinensis HOM05D000610 ORTHO05D004774 2.2e-112 409.5 280 74.6
TPR.G3701 Trifolium pratense HOM05D000610 ORTHO05D004774 2.9e-112 409.1 279 72.4
Glyma.03G136000 Glycine max HOM05D000610 ORTHO05D004774 3.8e-112 408.7 279 71.0
CANSAT80G2124 Cannabis sativa HOM05D000610 ORTHO05D004774 6.4e-112 407.9 275 74.2
Manes.09G020400 Manihot esculenta HOM05D000610 ORTHO05D004774 6.4e-112 407.9 277 74.7
Eucgr.A02339 Eucalyptus grandis HOM05D000610 ORTHO05D004774 2.4e-111 406.0 278 72.7
Lj1g0005409 Lotus japonicus HOM05D000610 ORTHO05D004774 7.1e-111 404.4 279 70.3
Nn7g36312 Nelumbo nucifera HOM05D000610 ORTHO05D004774 2.7e-110 402.5 278 73.0
DCAR_020494 Daucus carota HOM05D000610 ORTHO05D004774 4.6e-110 401.7 274 73.7
THA.LOC104824436 Tarenaya hassleriana HOM05D000610 ORTHO05D004774 5.1e-109 398.3 270 73.7
Medtr7g091380 Medicago truncatula HOM05D000610 ORTHO05D004774 6.6e-109 397.9 274 70.8
CiPaw.09G038900 Carya illinoinensis HOM05D000610 ORTHO05D004774 1.1e-108 397.1 268 73.9
Phvul.001G131150 Phaseolus vulgaris HOM05D000610 ORTHO05D004774 1.5e-108 396.7 274 70.4
Lalb_Chr25g0287161 Lupinus albus HOM05D000610 ORTHO05D004774 2.5e-108 396.0 279 69.5
PSO384G3904 Papaver somniferum HOM05D000610 ORTHO05D004774 1.3e-107 393.7 271 73.4
Rhsim03G0027100 Rhododendron simsii HOM05D000610 ORTHO05D004774 1.3e-107 393.7 279 71.0
TWI74G1635 Tripterygium wilfordii HOM05D000610 ORTHO05D004774 2.1e-107 392.9 278 71.2
AL4G40000 Arabidopsis lyrata HOM05D000610 ORTHO05D004774 6.2e-107 391.3 270 71.9
BolC3t15161H Brassica oleracea HOM05D000610 ORTHO05D004774 6.2e-107 391.3 265 72.1
AT2G41700 Arabidopsis thaliana HOM05D000610 ORTHO05D004774 8.1e-107 391.0 270 71.1
CARHR136790 Cardamine hirsuta HOM05D000610 ORTHO05D004774 8.1e-107 391.0 270 71.5
Thhalv10016127m.g Eutrema salsugineum HOM05D000610 ORTHO05D004774 1.4e-106 390.2 270 71.1
TWI53G1231 Tripterygium wilfordii HOM05D000610 ORTHO05D004774 1.4e-106 390.2 267 73.4
Carub.0004s2397 Capsella rubella HOM05D000610 ORTHO05D004774 1.8e-106 389.8 265 71.7
Sp4g23940 Schrenkiella parvula HOM05D000610 ORTHO05D004774 1.8e-106 389.8 270 71.1
BraA03t11555Z Brassica rapa HOM05D000610 ORTHO05D004774 3.4e-105 385.6 273 70.3
Migut.J01749 Erythranthe guttata HOM05D000610 ORTHO05D004774 9.9e-105 384.0 268 71.6
Sed0024936 Sechium edule HOM05D000610 ORTHO05D004774 2.9e-104 382.5 281 66.5
CsaV3_4G011860 Cucumis sativus L. HOM05D000610 ORTHO05D004774 4.9e-104 381.7 273 69.6
MSTRG.6422 Avicennia marina HOM05D000610 ORTHO05D004774 6.4e-104 381.3 278 68.7
MELO3C023103.2 Cucumis melo HOM05D000610 ORTHO05D004774 6.4e-104 381.3 273 69.6
SGA_v2.0_scaffold69G23121 Striga asiatica HOM05D000610 ORTHO05D004774 6.4e-104 381.3 271 71.2
A03p23380 Brassica napus HOM05D000610 ORTHO05D004774 4.2e-103 378.6 292 65.8
HanXRQChr10g0300621 Helianthus annuus HOM05D000610 ORTHO05D004774 7.1e-103 377.9 270 70.4
Lsat_1_v5_gn_9_30620 Lactuca sativa HOM05D000610 ORTHO05D004774 9.3e-103 377.5 282 67.0
Peaxi162Scf00130g00325 Petunia axillaris HOM05D000610 ORTHO05D004774 2.7e-102 375.9 273 69.6
CAN.G676.30 Capsicum annuum HOM05D000610 ORTHO05D004774 3.5e-102 375.6 279 68.8
ECA247G3032 Erigeron canadensis HOM05D000610 ORTHO05D004774 1.3e-101 373.6 270 68.5
Solyc04g015970.3 Solanum lycopersicum HOM05D000610 ORTHO05D004774 6.6e-101 371.3 279 68.5
Sopen04g007980 Solanum pennellii HOM05D000610 ORTHO05D004774 6.6e-101 371.3 279 68.5
Ah.04g151590 Amaranthus hybridus HOM05D000610 ORTHO05D004774 2.5e-100 369.4 280 67.9
Cc06_g17650 Coffea canephora HOM05D000610 ORTHO05D004774 8.1e-99 364.4 268 68.3
EL10Ac3g07101 Beta vulgaris HOM05D000610 ORTHO05D004774 5.3e-98 361.7 269 66.9
Ca_08446_v3 Cicer arietinum L. HOM05D000610 ORTHO05D004774 2.0e-97 359.8 248 69.8
SEGI_25518 Sequoiadendron giganteum HOM05D000610 ORTHO05D004774 4.9e-96 355.1 302 61.9
MBI19_g13038_MAGBIO Magnolia biondii HOM05D000610 ORTHO05D004774 3.2e-95 352.4 271 68.3
ATR0188G019 Amborella trichopoda HOM05D000610 ORTHO05D004774 3.9e-93 345.5 316 58.5
Aa31LG1G23710 Aethionema arabicum HOM05D000610 ORTHO05D004774 4.3e-92 342.0 265 65.7
SalBow6G6580 Salvia bowleyana HOM05D000610 ORTHO05D004774 4.3e-92 342.0 330 57.6
HPP92_019408 Vanilla planifolia HOM05D000610 ORTHO05D004774 2.1e-91 339.7 278 61.9
SalBow6G0358 Salvia bowleyana HOM05D000610 ORTHO05D004774 2.8e-91 339.3 335 57.0
Nitab4.5_0009615g0020 Nicotiana tabacum HOM05D000610 ORTHO05D004774 5.5e-87 325.1 279 62.4
AUR62026051 Chenopodium quinoa HOM05D000610 ORTHO05D004774 2.1e-86 323.2 281 63.3
Nitab4.5_0000586g0130 Nicotiana tabacum HOM05D000610 ORTHO05D004774 7.9e-86 321.2 279 62.0
Oeu023112.1 Olea europaea HOM05D000610 ORTHO05D004774 1.3e-85 320.5 235 69.4
AUR62024461 Chenopodium quinoa HOM05D000610 ORTHO05D004774 3.3e-84 315.8 281 62.3
C03p27900 Brassica napus HOM05D000610 ORTHO05D004774 5.7e-84 315.1 218 68.8
CDE05G2711 Ceratophyllum demersum HOM05D000610 ORTHO05D004774 5.7e-84 315.1 267 61.8
vmacro07838 Vaccinium macrocarpon HOM05D000610 ORTHO05D004774 1.4e-82 310.5 265 61.9
FvH4_6g24100 Fragaria vesca HOM05D000610 ORTHO05D004774 4.2e-79 298.9 200 74.0
MD14G1075700 Malus domestica HOM05D000610 ORTHO05D004774 1.6e-75 287.0 198 72.7
ClCG04G003360 Citrullus lanatus HOM05D000610 ORTHO05D004774 4.8e-75 285.4 220 65.9
Actinidia39216 Actinidia chinensis HOM05D000610 ORTHO05D004774 8.2e-75 284.6 195 72.3
unitig_8.g3505 Utricularia gibba HOM05D000610 ORTHO05D004774 5.0e-72 275.4 192 67.7
SMO266G0031 Selaginella moellendorffii HOM05D000610 ORTHO05D004774 2.1e-70 270.0 278 49.6
Duzib093G2237 Durio zibethinus HOM05D000610 ORTHO05D004774 1.7e-67 260.4 262 53.4
VMungo1383G2081 Vigna mungo HOM05D000610 ORTHO05D004774 1.9e-63 246.9 176 65.9
Psat6g119800 Pisum sativum HOM05D000610 ORTHO05D004774 1.0e-56 224.6 151 71.5
QL08p004628 Quercus lobata HOM05D002167 ORTHO05D004774 1.3e-43 181.0 112 75.9
HPP92_019406 Vanilla planifolia HOM05D000610 ORTHO05D004774 1.4e-37 161.0 271 39.1
Duzib128G1628 Durio zibethinus HOM05D000610 ORTHO05D004774 2.3e-32 143.7 270 37.0
Actinidia09320 Actinidia chinensis HOM05D000610 ORTHO05D004774 5.4e-26 122.5 89 73.0
TAR636G2602 Trochodendron aralioides HOM05D000610 ORTHO05D004774 1.9e-23 114.0 79 69.6
VMungo1383G1299 Vigna mungo HOM05D000610 ORTHO05D004774 1.2e-12 78.2 51 72.5
Hma1.2p1_0871F.1_g231060 Hydrangea macrophylla HOM05D000610 ORTHO05D004774 2.0e-12 77.4 53 73.6
ClCG04G003340 Citrullus lanatus HOM05D000610 ORTHO05D004774 1.3e-11 74.7 52 67.3
Pp3c4_27650 Physcomitrium patens HOM05D000610 ORTHO05D004774 4.1e-10 69.7 264 25.4
CBR_g38217 Chara braunii HOM05D000610 ORTHO05D004774 2.7e-09 67.0 268 26.1
Mapoly0049s0026 Marchantia polymorpha HOM05D000610 ORTHO05D004774 3.3e-07 60.1 137 29.2
PRCOL_00006093 Prasinoderma coloniale HOM05D000610 ORTHO05D004774 5.6e-07 59.3 157 25.5
HPP92_019441 Vanilla planifolia HOM05D005572 ORTHO05D007494 2.1e-06 57.4 47 61.7


User provided reference genes

Program Settings