Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 1.8e-276 955.3 488 100.0
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 1.7e-144 516.9 579 51.3
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 2.2e-144 516.5 574 51.7
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 1.8e-143 513.5 570 50.7
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 7.7e-142 508.1 568 52.8
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 1.0e-141 507.7 571 52.2
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 4.2e-140 502.3 533 55.3
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 3.0e-138 496.1 576 50.3
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 8.8e-138 494.6 573 50.4
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 2.6e-137 493.0 580 52.4
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.1e-135 487.6 575 52.3
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 1.4e-135 487.3 546 54.4
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 1.8e-135 486.9 575 50.8
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.7e-134 481.5 582 49.3
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.9e-132 476.9 566 50.7
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 8.8e-130 468.0 584 48.3
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 1.2e-129 467.6 603 48.9
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 1.5e-129 467.2 574 49.8
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.3e-128 461.8 581 48.9
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 6.3e-128 461.8 581 48.7
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 2.3e-125 453.4 570 48.1
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.8e-125 452.6 570 48.1
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 4.3e-124 449.1 577 46.1
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 3.6e-123 446.0 561 48.7
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 4.7e-123 445.7 581 47.5
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 1.4e-122 444.1 582 46.4
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 3.0e-122 443.0 562 48.4
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 4.4e-121 439.1 579 47.0
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 1.7e-120 437.2 559 47.2
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 2.2e-120 436.8 585 46.3
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 3.7e-120 436.0 544 49.1
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 3.7e-120 436.0 575 47.0
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.4e-119 434.1 647 43.3
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 4.1e-119 432.6 588 47.1
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 2.7e-118 429.9 553 46.7
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 3.5e-118 429.5 567 47.1
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 4.6e-118 429.1 581 46.1
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 5.9e-118 428.7 567 47.1
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 5.0e-117 425.6 551 46.8
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.1e-116 424.5 572 44.9
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 1.1e-116 424.5 576 43.9
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 1.5e-116 424.1 587 44.6
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 4.3e-116 422.5 580 46.4
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 1.6e-115 420.6 598 44.6
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 6.2e-115 418.7 574 44.4
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 4.0e-114 416.0 601 45.3
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 6.8e-114 415.2 564 44.0
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 8.9e-114 414.8 568 43.7
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 1.2e-113 414.5 573 43.1
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 3.4e-113 412.9 560 46.8
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.7e-112 410.6 578 44.3
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.9e-111 407.1 571 46.1
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 5.4e-111 405.6 551 45.6
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 7.0e-111 405.2 575 44.0
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.6e-110 404.1 574 43.6
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 2.0e-110 403.7 568 43.5
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 2.7e-110 403.3 592 44.6
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 2.7e-110 403.3 553 46.1
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 3.5e-110 402.9 566 45.4
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 1.0e-109 401.4 568 43.7
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 2.3e-109 400.2 553 43.9
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 3.9e-109 399.4 560 43.8
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 6.6e-109 398.7 574 42.7
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 1.5e-108 397.5 553 44.1
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 1.9e-108 397.1 572 43.5
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 3.3e-108 396.4 558 46.4
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 2.1e-107 393.7 550 46.2
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 4.7e-107 392.5 586 43.9
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 8.1e-107 391.7 570 45.3
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.8e-106 390.6 614 42.3
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.8e-106 390.6 568 42.6
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 1.2e-105 387.9 578 42.2
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 1.5e-105 387.5 553 43.6
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 5.8e-105 385.6 553 43.4
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 7.5e-105 385.2 576 43.8
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 5.4e-103 379.0 578 43.6
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 3.5e-102 376.3 573 42.8
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.9e-100 370.5 576 42.7
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 8.1e-99 365.2 607 41.2
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.1e-98 364.8 570 42.5
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 1.1e-98 364.8 587 41.9
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.8e-98 364.0 607 41.2
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.3e-98 363.6 568 41.9
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 4.0e-98 362.8 576 40.3
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 1.5e-97 360.9 580 40.5
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 4.4e-97 359.4 545 43.3
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 5.8e-97 359.0 565 42.7
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 4.9e-96 355.9 587 40.9
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.6e-94 350.9 455 47.3
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 1.3e-93 347.8 585 39.5
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 1.9e-92 344.0 567 40.0
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.2e-91 341.3 549 40.6
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.1e-90 338.2 554 40.8
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 7.6e-89 332.0 572 39.7
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 1.1e-87 328.2 590 37.8
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 1.1e-87 328.2 578 39.6
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 1.2e-86 324.7 568 37.9
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 2.1e-86 323.9 568 38.2
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 4.6e-86 322.8 576 39.6
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 7.8e-86 322.0 575 39.1
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 3.0e-85 320.1 576 39.2
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.9e-85 319.7 279 59.9
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 8.7e-85 318.5 586 37.5
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.1e-84 318.2 569 39.9
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 1.1e-84 318.2 562 41.3
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 4.3e-84 316.2 584 40.2
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 1.3e-83 314.7 555 38.4
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 1.6e-83 314.3 571 40.1
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 1.6e-83 314.3 453 44.6
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 2.8e-83 313.5 575 39.1
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.8e-82 310.8 508 41.9
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 1.8e-82 310.8 617 36.5
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.1e-82 310.1 541 39.9
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 5.3e-82 309.3 565 37.3
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 9.9e-81 305.1 556 38.5
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.3e-80 304.7 293 55.6
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 2.4e-79 300.4 593 37.6
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.8e-74 284.3 596 36.6
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 6.9e-74 282.3 570 37.2
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 6.9e-74 282.3 556 37.2
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 2.0e-73 280.8 409 44.7
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.1e-71 275.0 581 35.5
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 5.6e-68 262.7 566 35.2
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 2.1e-67 260.8 587 34.1
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 2.8e-67 260.4 570 34.4
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 6.2e-67 259.2 587 33.9
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.1e-66 258.5 446 41.5
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.6e-65 253.8 257 56.0
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 3.4e-65 253.4 577 32.8
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.4e-63 248.1 287 53.0
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.1e-58 231.9 332 47.0
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 7.2e-55 219.2 201 56.2
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 6.7e-53 212.6 343 43.1
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.2e-48 197.6 204 56.9
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 3.2e-47 193.7 520 33.8
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 4.2e-47 193.4 241 45.6
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 5.5e-47 193.0 235 46.8
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.7e-44 183.0 241 49.8
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.4e-44 182.6 351 38.5
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.9e-41 172.9 176 54.0
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 3.0e-37 160.6 308 34.4
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 5.7e-36 156.4 311 35.4
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.3e-35 155.2 329 36.8
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 3.7e-35 153.7 213 43.2
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 8.2e-35 152.5 328 36.0
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 9.1e-34 149.1 248 35.1
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 1.2e-33 148.7 245 42.4
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.0e-32 145.6 229 41.0
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.2e-32 144.4 233 40.8
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 1.9e-31 141.4 243 38.3
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 2.7e-30 137.5 204 42.2
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.0e-29 135.6 178 50.6
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 5.9e-25 119.8 191 40.8
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.3e-24 118.6 95 65.3
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 1.1e-23 115.5 512 27.0
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 2.5e-23 114.4 206 36.4
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 5.5e-23 113.2 188 38.8
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 1.4e-21 108.6 91 62.6
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.0e-21 107.5 130 51.5
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 1.1e-18 99.0 254 31.9
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 5.4e-18 96.7 182 39.0
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.3e-16 92.0 167 41.9
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 3.2e-15 87.4 201 36.8
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 1.2e-14 85.5 195 33.8
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 1.0e-13 82.4 162 35.8
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.4e-13 82.0 95 42.1
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 2.4e-10 71.2 58 58.6
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.2e-06 58.9 64 48.4
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 2.8e-06 57.8 88 37.5
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 6.1e-06 56.6 66 47.0


User provided reference genes

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