Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 1.3e-207 726.1 364 100.0
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.2e-134 483.8 360 65.8
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 7.5e-134 481.1 361 65.4
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 9.8e-134 480.7 359 65.2
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 1.3e-133 480.3 359 65.5
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.9e-133 479.2 359 64.9
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 2.9e-133 479.2 361 65.4
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 4.9e-133 478.4 359 65.2
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 4.9e-133 478.4 360 65.3
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.1e-132 477.2 359 65.2
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 1.4e-132 476.9 360 65.0
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.4e-132 476.1 360 65.3
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.4e-132 476.1 360 65.3
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.2e-132 475.7 360 65.0
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 3.2e-132 475.7 360 66.1
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 3.2e-132 475.7 360 64.4
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 4.1e-132 475.3 359 63.8
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 5.4e-132 474.9 359 64.1
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 5.4e-132 474.9 360 65.0
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 9.2e-132 474.2 359 64.3
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.2e-131 473.8 359 64.3
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.2e-131 473.8 360 63.9
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.2e-131 473.8 360 65.0
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 1.6e-131 473.4 360 64.7
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.6e-131 473.4 359 64.3
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 2.1e-131 473.0 360 63.9
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 2.7e-131 472.6 359 63.8
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.5e-131 472.2 359 64.6
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 4.6e-131 471.9 359 64.1
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 4.6e-131 471.9 359 64.6
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 6.0e-131 471.5 360 64.4
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 6.0e-131 471.5 360 64.4
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 7.8e-131 471.1 359 64.1
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 7.8e-131 471.1 360 63.9
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 7.8e-131 471.1 360 64.4
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 7.8e-131 471.1 360 64.4
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.0e-130 470.7 360 64.4
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.0e-130 470.7 360 63.6
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 1.3e-130 470.3 359 63.8
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.7e-130 469.9 360 64.2
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.7e-130 469.9 360 63.9
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.7e-130 469.9 360 63.3
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.7e-130 469.9 360 63.9
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 2.3e-130 469.5 359 63.8
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 2.3e-130 469.5 360 63.6
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 3.0e-130 469.2 360 63.1
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 3.0e-130 469.2 360 63.6
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 3.9e-130 468.8 359 63.0
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 3.9e-130 468.8 359 63.0
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 3.9e-130 468.8 360 63.9
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 3.9e-130 468.8 359 63.5
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 3.9e-130 468.8 359 63.5
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 6.6e-130 468.0 360 63.9
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 6.6e-130 468.0 360 63.3
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 6.6e-130 468.0 361 62.9
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 8.6e-130 467.6 360 63.9
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 8.6e-130 467.6 360 63.1
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 8.6e-130 467.6 359 64.1
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.1e-129 467.2 360 63.9
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.1e-129 467.2 360 63.9
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.1e-129 467.2 359 64.1
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.1e-129 467.2 359 63.2
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.1e-129 467.2 358 63.1
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 1.1e-129 467.2 359 63.5
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.5e-129 466.8 359 63.5
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.5e-129 466.8 359 64.1
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.5e-129 466.8 359 63.8
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 1.9e-129 466.5 359 63.8
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.9e-129 466.5 359 63.8
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 1.9e-129 466.5 359 63.2
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 2.5e-129 466.1 360 63.3
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.5e-129 466.1 359 63.5
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 3.3e-129 465.7 360 63.6
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 3.3e-129 465.7 359 63.8
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 4.3e-129 465.3 360 63.3
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 4.3e-129 465.3 359 63.8
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 7.3e-129 464.5 360 63.1
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 9.5e-129 464.2 360 63.1
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 9.5e-129 464.2 360 62.5
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.2e-128 463.8 359 63.2
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 1.2e-128 463.8 358 62.0
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.6e-128 463.4 359 63.8
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.6e-128 463.4 359 63.8
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.6e-128 463.4 360 63.1
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 2.1e-128 463.0 358 62.3
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.1e-128 463.0 360 62.2
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 2.1e-128 463.0 359 63.0
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 2.8e-128 462.6 359 62.7
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 2.8e-128 462.6 360 61.9
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 3.6e-128 462.2 359 63.2
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 4.7e-128 461.8 360 63.3
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 4.7e-128 461.8 380 62.1
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 4.7e-128 461.8 358 62.3
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.1e-127 460.7 359 63.2
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.1e-127 460.7 358 63.1
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.4e-127 460.3 359 63.5
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 1.8e-127 459.9 359 63.5
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.8e-127 459.9 359 63.2
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 2.3e-127 459.5 360 62.5
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 5.2e-127 458.4 360 62.8
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 6.8e-127 458.0 359 63.0
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 6.8e-127 458.0 359 63.0
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 6.8e-127 458.0 337 65.6
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.2e-126 457.2 360 61.7
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 1.5e-126 456.8 359 63.0
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 2.0e-126 456.4 359 62.7
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 2.0e-126 456.4 359 62.7
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 2.0e-126 456.4 364 61.3
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.0e-126 456.4 360 61.4
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.0e-126 456.4 402 57.7
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 3.4e-126 455.7 360 60.8
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 7.5e-126 454.5 359 62.4
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 9.9e-126 454.1 360 61.4
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.9e-125 452.6 360 60.8
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-124 450.7 359 61.6
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.1e-124 450.7 359 61.6
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.9e-124 449.9 360 61.1
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 2.4e-124 449.5 359 61.8
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 2.4e-124 449.5 359 61.8
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 3.2e-124 449.1 359 62.1
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 4.1e-124 448.7 359 61.8
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.5e-121 439.5 360 60.6
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 7.3e-121 438.0 363 57.3
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 1.6e-120 436.8 360 61.7
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 8.9e-119 431.0 372 59.7
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 3.4e-118 429.1 433 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 8.4e-117 424.5 359 57.4
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.1e-116 424.1 402 54.0
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 9.2e-116 421.0 364 56.6
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 7.8e-115 417.9 309 65.4
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.7e-114 416.8 359 58.5
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 6.6e-114 414.8 360 57.8
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.3e-113 412.1 359 56.5
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 3.6e-112 409.1 360 55.3
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 6.2e-112 408.3 311 64.0
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.4e-111 406.4 359 55.7
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 6.9e-111 404.8 359 55.4
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.8e-109 399.1 359 54.6
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 4.2e-108 395.6 293 65.9
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.1e-105 387.5 300 62.7
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.6e-104 383.6 287 64.1
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.4e-100 370.5 299 61.5
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 2.6e-94 349.7 315 57.8
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 4.6e-91 339.0 361 49.0
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 1.9e-89 333.6 358 51.7
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.3e-81 306.2 303 53.5
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 5.0e-77 292.4 216 69.4
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.0e-61 241.5 322 39.4
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 5.9e-54 215.7 170 66.5
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.0e-53 214.9 189 57.1
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.6e-51 206.5 191 58.1
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 4.2e-44 183.0 164 57.3
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 2.9e-37 160.2 119 57.1
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.2e-33 148.3 162 45.7
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 1.0e-29 135.2 119 56.3
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 8.9e-26 122.1 80 71.2
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 2.0e-25 120.9 150 45.3
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 1.2e-22 111.7 151 42.4
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 9.8e-17 92.0 69 62.3
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 8.3e-16 89.0 74 58.1
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.3e-13 81.6 86 45.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.4e-10 71.6 86 45.3
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 2.6e-09 67.4 51 52.9


User provided reference genes

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