Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 7.6e-89 330.9 220 100.0
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 1.9e-63 246.5 223 78.9
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 3.0e-61 239.2 222 78.4
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 1.5e-60 236.9 221 77.4
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 1.3e-59 233.8 221 77.4
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 1.8e-58 229.9 223 76.7
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 6.9e-58 228.0 218 70.6
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 3.4e-57 225.7 219 73.1
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 5.0e-56 221.9 218 73.4
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 1.4e-55 220.3 220 70.5
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 2.5e-55 219.5 219 71.2
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 3.2e-55 219.2 220 74.5
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 2.1e-54 216.5 221 69.7
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 2.1e-54 216.5 221 69.7
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 2.1e-54 216.5 221 69.7
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 4.7e-54 215.3 220 70.0
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 7.9e-54 214.5 221 67.0
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 1.0e-53 214.2 221 68.8
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 1.4e-53 213.8 222 72.1
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 2.3e-53 213.0 224 68.8
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 1.1e-52 210.7 222 69.8
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 2.6e-52 209.5 220 71.4
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 3.3e-52 209.1 221 66.5
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 7.4e-52 208.0 220 66.4
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 9.7e-52 207.6 222 68.0
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 1.3e-51 207.2 226 69.0
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 1.7e-51 206.8 222 69.8
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 1.7e-51 206.8 222 68.5
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 2.2e-51 206.5 221 70.6
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 2.8e-51 206.1 226 67.3
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 2.8e-51 206.1 224 66.5
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 4.8e-51 205.3 225 67.6
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 6.3e-51 204.9 221 73.3
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 8.2e-51 204.5 221 70.1
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 8.2e-51 204.5 218 71.1
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 1.1e-50 204.1 221 70.1
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 1.4e-50 203.8 223 69.1
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 1.2e-49 200.7 223 68.6
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.2e-49 200.7 218 67.4
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 1.2e-49 200.7 219 70.3
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 2.6e-49 199.5 222 72.5
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 2.6e-49 199.5 223 65.5
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 4.5e-49 198.7 223 65.5
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 4.5e-49 198.7 222 70.3
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 7.7e-49 198.0 225 69.3
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 1.0e-48 197.6 219 66.7
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 1.0e-48 197.6 220 66.4
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 1.3e-48 197.2 220 66.8
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 3.8e-48 195.7 223 65.0
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 3.8e-48 195.7 224 68.8
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 8.5e-48 194.5 219 65.3
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 1.1e-47 194.1 220 65.9
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.1e-47 194.1 212 70.8
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 3.2e-47 192.6 222 68.0
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 7.2e-47 191.4 220 67.3
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 1.2e-46 190.7 220 64.1
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 3.6e-46 189.1 223 57.4
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 3.6e-46 189.1 225 65.3
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 4.7e-46 188.7 219 69.4
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 8.0e-46 188.0 220 65.5
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 8.0e-46 188.0 226 64.6
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 1.0e-45 187.6 220 65.5
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 1.0e-45 187.6 220 65.5
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 2.3e-45 186.4 150 83.3
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 2.3e-45 186.4 229 62.0
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 3.0e-45 186.0 156 81.4
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 3.0e-45 186.0 210 67.6
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 1.5e-44 183.7 219 68.0
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 2.0e-44 183.3 231 65.4
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 2.6e-44 183.0 227 65.2
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 4.8e-43 178.7 145 69.7
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 9.1e-42 174.5 221 64.3
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 9.1e-42 174.5 160 75.6
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 2.0e-41 173.3 220 62.7
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 2.0e-41 173.3 170 62.9
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 3.5e-41 172.6 222 61.7
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 2.2e-40 169.9 218 61.5
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 3.8e-40 169.1 177 68.9
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 3.8e-40 169.1 225 60.4
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 6.5e-40 168.3 180 63.3
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 8.5e-40 167.9 220 61.8
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 2.5e-39 166.4 221 61.1
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 9.4e-39 164.5 165 75.2
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 2.3e-37 159.8 213 62.4
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 6.8e-37 158.3 128 79.7
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 1.5e-36 157.1 223 60.5
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 8.5e-32 141.4 158 69.6
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 4.2e-31 139.0 126 81.0
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 2.8e-30 136.3 107 88.8
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 4.7e-30 135.6 223 55.2
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 5.2e-29 132.1 107 93.5
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 5.2e-29 132.1 217 53.5
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 3.7e-27 125.9 159 63.5
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 5.4e-26 122.1 106 86.8
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 7.0e-26 121.7 149 65.8
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 7.8e-25 118.2 171 51.5
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 1.1e-23 114.4 168 57.1
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 2.5e-23 113.2 76 82.9
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.4e-21 107.5 106 81.1
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 5.2e-21 105.5 88 63.6
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 2.6e-20 103.2 166 37.3
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 3.4e-20 102.8 117 53.8
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 5.7e-20 102.1 117 53.8
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 5.7e-20 102.1 145 45.5
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 2.2e-19 100.1 117 52.1
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 1.4e-18 97.4 172 50.0
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 6.6e-16 88.6 91 56.0
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 6.2e-14 82.0 93 52.7
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 4.0e-13 79.3 141 44.7
Psat2g007880 Pisum sativum HOM05D007100 ORTHO05D008958 1.5e-12 77.4 81 54.3
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 1.2e-09 67.8 88 51.1
ATR0743G144 Amborella trichopoda HOM05D007100 ORTHO05D008958 3.3e-07 59.7 100 46.0
AUR62039691 Chenopodium quinoa HOM05D026575 ORTHO05D028765 7.3e-07 58.5 39 82.1
AUR62044181 Chenopodium quinoa HOM05D026575 ORTHO05D028765 2.1e-06 57.0 39 79.5
ATR0071G034 Amborella trichopoda HOM05D007100 ORTHO05D008958 4.7e-06 55.8 100 44.0
ATR0829G181 Amborella trichopoda HOM05D007100 ORTHO05D008958 4.7e-06 55.8 139 36.7


User provided reference genes

Program Settings