Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 2.9e-70 268.5 139 100.0
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 1.0e-30 137.1 135 56.3
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 3.9e-30 135.2 137 59.1
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.3e-29 131.7 131 60.3
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 7.3e-29 131.0 132 55.3
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 9.5e-29 130.6 132 59.1
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 1.2e-28 130.2 140 57.9
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.2e-28 130.2 131 59.5
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.2e-28 130.2 131 59.5
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.2e-28 130.2 131 59.5
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.7e-28 128.3 131 59.5
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 6.8e-27 124.4 138 52.9
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 3.4e-26 122.1 136 52.2
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 5.8e-26 121.3 132 52.3
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 7.6e-26 120.9 131 51.9
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 2.4e-24 115.9 140 50.0
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 4.1e-24 115.2 141 47.5
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 9.2e-24 114.0 135 52.6
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.2e-23 113.6 123 53.7
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.6e-23 113.2 142 46.5
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 2.1e-23 112.8 139 48.9
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 2.7e-23 112.5 132 47.7
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 2.7e-23 112.5 135 50.4
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 7.8e-23 110.9 137 47.4
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 1.0e-22 110.5 122 51.6
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.3e-22 110.2 124 52.4
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 2.3e-22 109.4 114 53.5
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 2.3e-22 109.4 134 46.3
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.9e-22 108.6 134 49.3
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.9e-22 108.6 130 49.2
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 3.9e-22 108.6 124 52.4
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 6.6e-22 107.8 131 46.6
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.1e-21 107.1 137 45.3
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.1e-21 107.1 138 49.3
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.1e-21 107.1 138 50.0
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.5e-21 106.7 134 53.7
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.9e-21 106.3 135 48.1
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.9e-21 106.3 130 48.5
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 2.5e-21 105.9 142 45.8
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 2.5e-21 105.9 138 45.7
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 2.5e-21 105.9 138 50.7
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 4.3e-21 105.1 138 47.8
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 7.3e-21 104.4 122 50.8
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 9.6e-21 104.0 132 48.5
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 9.6e-21 104.0 125 49.6
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 1.2e-20 103.6 137 47.4
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.6e-20 103.2 138 46.4
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 2.8e-20 102.4 132 43.9
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 4.7e-20 101.7 138 49.3
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 4.7e-20 101.7 148 43.2
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.2e-20 101.3 137 43.8
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 6.2e-20 101.3 147 46.3
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 6.2e-20 101.3 145 43.4
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 1.1e-19 100.5 125 46.4
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.4e-19 100.1 148 43.2
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 2.4e-19 99.4 126 48.4
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 2.4e-19 99.4 125 48.8
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 4.0e-19 98.6 142 45.1
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 4.0e-19 98.6 114 50.0
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.2e-18 97.1 131 44.3
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 3.4e-18 95.5 126 48.4
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 4.4e-18 95.1 136 42.6
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 9.9e-18 94.0 133 41.4
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.9e-18 94.0 131 47.3
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 1.3e-17 93.6 124 48.4
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.7e-17 93.2 127 44.9
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.2e-17 92.8 135 41.5
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 2.9e-17 92.4 134 43.3
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 6.4e-17 91.3 137 43.1
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 1.1e-16 90.5 129 44.2
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 1.4e-16 90.1 126 45.2
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 2.4e-16 89.4 138 40.6
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 4.2e-16 88.6 128 46.1
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 7.1e-16 87.8 127 48.0
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.2e-15 87.0 133 39.8
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 2.7e-15 85.9 118 50.0
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 3.5e-15 85.5 127 47.2
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 4.6e-15 85.1 107 46.7
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 7.8e-15 84.3 128 41.4
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.0e-14 84.0 114 39.5
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.0e-14 84.0 125 44.0
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.3e-14 83.6 139 39.6
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.3e-14 82.8 121 39.7
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.3e-14 82.8 97 49.5
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 6.6e-14 81.3 132 38.6
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 8.7e-14 80.9 133 36.1
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.9e-13 79.7 145 40.7
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 5.6e-13 78.2 108 42.6
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 9.6e-13 77.4 128 41.4
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.6e-12 76.6 123 40.7
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 2.1e-12 76.3 134 37.3
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 2.8e-12 75.9 140 37.1
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 3.6e-12 75.5 120 38.3
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 3.6e-12 75.5 136 35.3
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 6.2e-12 74.7 133 35.3
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 6.2e-12 74.7 136 35.3
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 1.1e-11 73.9 126 38.1
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.5e-10 70.1 116 45.7
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 2.6e-10 69.3 109 40.4
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 3.4e-10 68.9 109 44.0
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 3.4e-10 68.9 148 32.4
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.4e-10 68.9 111 45.0
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 5.8e-10 68.2 104 45.2
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 5.8e-10 68.2 143 35.7
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 5.8e-10 68.2 143 35.7
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 7.6e-10 67.8 146 37.0
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 9.9e-10 67.4 129 38.0
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 9.9e-10 67.4 112 38.4
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 9.9e-10 67.4 112 38.4
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 9.9e-10 67.4 124 34.7
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.3e-09 67.0 109 39.4
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 1.3e-09 67.0 109 43.1
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.7e-09 66.6 108 42.6
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 4.9e-09 65.1 111 39.6
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 1.1e-08 63.9 136 36.8
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 1.1e-08 63.9 150 31.3
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 1.4e-08 63.5 154 29.9
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 1.4e-08 63.5 149 32.2
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.9e-08 63.2 109 40.4
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.9e-08 63.2 109 38.5
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.9e-08 63.2 109 40.4
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 1.9e-08 63.2 119 41.2
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 2.4e-08 62.8 154 29.9
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 9.3e-08 60.8 109 40.4
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 9.3e-08 60.8 109 40.4
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 9.3e-08 60.8 109 37.6
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 1.2e-07 60.5 109 39.4
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 2.7e-07 59.3 152 28.9
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 3.5e-07 58.9 143 30.8
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 4.6e-07 58.5 134 30.6
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 4.6e-07 58.5 141 31.9
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 4.6e-07 58.5 136 33.8
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 7.9e-07 57.8 104 40.4
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 7.9e-07 57.8 134 36.6
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 1.3e-06 57.0 147 27.2
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 2.3e-06 56.2 141 31.2
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 3.0e-06 55.8 112 39.3
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 6.6e-06 54.7 105 37.1
unitig_21.g20302 Utricularia gibba HOM05D005728 ORTHO05D005733 8.7e-06 54.3 126 36.5


User provided reference genes

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