Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 2.2e-70 268.9 137 100.0
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 1.5e-31 139.8 138 62.3
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 2.6e-31 139.0 137 59.1
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 3.2e-29 132.1 146 58.9
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 2.3e-27 125.9 139 57.6
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.3e-25 120.2 137 55.5
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.0e-23 112.8 134 50.7
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 4.5e-23 111.7 134 50.0
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 1.3e-22 110.2 137 52.6
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 5.0e-22 108.2 146 50.0
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 9.4e-21 104.0 139 50.4
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 9.4e-21 104.0 137 54.0
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.6e-20 103.2 138 50.7
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.6e-20 103.2 138 50.7
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.7e-20 102.4 146 49.3
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 3.6e-20 102.1 139 50.4
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 1.2e-18 97.1 143 46.2
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 2.0e-18 96.3 137 47.4
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 2.6e-18 95.9 142 49.3
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 1.3e-17 93.6 139 48.2
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 1.3e-17 93.6 145 48.3
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 1.7e-17 93.2 137 46.0
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.8e-17 91.7 140 46.4
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.8e-17 91.7 140 46.4
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 6.3e-17 91.3 137 44.5
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 4.1e-16 88.6 142 47.2
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.0e-16 87.8 131 49.6
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 9.1e-16 87.4 138 47.1
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 1.6e-15 86.7 140 45.7
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 1.6e-15 86.7 139 46.0
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 3.5e-15 85.5 143 47.6
Gohir.A07G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.7e-14 83.2 139 48.2
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 2.9e-14 82.4 144 47.2
ECA234G3783 Erigeron canadensis HOM05D004793 ORTHO05D004423 6.5e-14 81.3 158 42.4
Gorai.001G099200 Gossypium raimondii HOM05D004793 ORTHO05D004423 8.5e-14 80.9 139 47.5
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 1.1e-13 80.5 138 45.7
Gohir.D07G092600 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.5e-13 80.1 139 47.5
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 1.5e-13 80.1 137 43.1
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.9e-13 79.7 140 44.3
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 1.9e-13 79.7 140 42.1
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 2.5e-13 79.3 137 42.3
Phvul.008G285200 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 3.2e-13 79.0 139 42.4
Sed0008787 Sechium edule HOM05D004793 ORTHO05D004423 1.2e-12 77.0 140 39.3
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 4.7e-12 75.1 131 43.5
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 8.0e-12 74.3 140 42.9
Eucgr.A01045 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.0e-11 73.9 139 39.6
MELO3C024110.2 Cucumis melo HOM05D004793 ORTHO05D004423 2.3e-11 72.8 143 41.3
Lsat_1_v5_gn_5_121620 Lactuca sativa HOM05D004793 ORTHO05D004423 5.2e-11 71.6 143 40.6
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 6.8e-11 71.2 149 40.3
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 6.8e-11 71.2 141 41.1
Oeu057608.1 Olea europaea HOM05D004793 ORTHO05D004423 8.8e-11 70.9 139 43.2
Oeu064364.1 Olea europaea HOM05D004793 ORTHO05D004423 8.8e-11 70.9 139 43.2
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.2e-10 70.5 145 40.0
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 1.5e-10 70.1 140 40.0
CAN.G1397.7 Capsicum annuum HOM05D037802 ORTHO05D004423 2.0e-10 69.7 139 39.6
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 2.6e-10 69.3 148 39.2
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 4.4e-10 68.6 140 40.7
Solyc07g047827.1 Solanum lycopersicum HOM05D037802 ORTHO05D004423 7.5e-10 67.8 138 38.4
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 1.3e-09 67.0 156 38.5
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 2.2e-09 66.2 113 41.6
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.2e-09 66.2 130 42.3
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.2e-09 66.2 137 40.9
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.2e-09 66.2 137 40.9
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.2e-09 66.2 142 39.4
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 2.8e-09 65.9 160 35.6
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 3.7e-09 65.5 146 37.0
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.7e-09 65.5 140 38.6
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 3.7e-09 65.5 144 38.2
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 4.8e-09 65.1 153 37.9
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 4.8e-09 65.1 143 41.3
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 8.3e-09 64.3 150 38.0
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 8.3e-09 64.3 151 39.1
HPP92_014035 Vanilla planifolia HOM05D004793 ORTHO05D004423 8.3e-09 64.3 137 40.1
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 1.1e-08 63.9 143 39.2
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 1.1e-08 63.9 143 39.2
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.1e-08 63.9 149 36.9
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 1.1e-08 63.9 131 38.2
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 1.1e-08 63.9 156 37.2
Haze_12687 Corylus avellana HOM05D004793 ORTHO05D004423 1.4e-08 63.5 147 36.1
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.8e-08 63.2 143 39.2
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 2.4e-08 62.8 143 37.8
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 3.1e-08 62.4 137 38.0
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 3.1e-08 62.4 137 41.6
CSS0019001 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.1e-08 62.0 141 40.4
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 4.1e-08 62.0 138 41.3
DCAR_019706 Daucus carota HOM05D004793 ORTHO05D004423 4.1e-08 62.0 133 38.3
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 4.1e-08 62.0 143 38.5
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 4.1e-08 62.0 143 38.5
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 4.1e-08 62.0 143 38.5
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 4.1e-08 62.0 143 38.5
Oeu029974.1 Olea europaea HOM05D027131 ORTHO05D013900 4.1e-08 62.0 43 79.1
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 4.1e-08 62.0 141 36.2
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 5.4e-08 61.6 151 35.1
Rhsim04G0038500 Rhododendron simsii HOM05D004793 ORTHO05D004423 5.4e-08 61.6 141 44.7
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 7.0e-08 61.2 143 37.8
ClCG02G002720 Citrullus lanatus HOM05D000222 ORTHO05D003997 9.1e-08 60.8 131 37.4
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 9.1e-08 60.8 145 38.6
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 9.1e-08 60.8 140 40.7
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 1.2e-07 60.5 146 40.4
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 1.2e-07 60.5 141 41.1
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.6e-07 60.1 145 37.9
SalBow7G3719 Salvia bowleyana HOM05D004793 ORTHO05D004423 1.6e-07 60.1 140 37.9
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.0e-07 59.7 164 38.4
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 2.0e-07 59.7 145 37.2
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 2.7e-07 59.3 141 39.0
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 2.7e-07 59.3 141 39.0
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 2.7e-07 59.3 152 36.8
HPP92_012227 Vanilla planifolia HOM05D004793 ORTHO05D004423 2.7e-07 59.3 44 65.9
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 3.5e-07 58.9 149 38.9
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.5e-07 58.9 152 36.2
CAN.G294.21 Capsicum annuum HOM05D004793 ORTHO05D004423 4.5e-07 58.5 137 36.5
Oeu063642.1 Olea europaea HOM05D004793 ORTHO05D004423 4.5e-07 58.5 144 37.5
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 4.5e-07 58.5 145 39.3
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.9e-07 58.2 144 37.5
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.9e-07 58.2 164 37.8
ClCG01G021350 Citrullus lanatus HOM05D028401 ORTHO05D034761 7.7e-07 57.8 174 32.8
Cc02_g34950 Coffea canephora HOM05D004793 ORTHO05D004423 7.7e-07 57.8 144 35.4
Cc09_g04750 Coffea canephora HOM05D004793 ORTHO05D004423 7.7e-07 57.8 148 35.1
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 7.7e-07 57.8 155 35.5
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 7.7e-07 57.8 148 38.5
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.0e-06 57.4 156 38.5
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 1.3e-06 57.0 138 35.5
Sopen07g024260 Solanum pennellii HOM05D037802 ORTHO05D004423 1.3e-06 57.0 122 37.7
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 1.7e-06 56.6 143 39.2
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 2.3e-06 56.2 151 35.8
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.3e-06 56.2 164 37.8
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 2.3e-06 56.2 149 35.6
ATR0712G036 Amborella trichopoda HOM05D004793 ORTHO05D004423 2.9e-06 55.8 141 35.5
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 3.8e-06 55.5 173 35.8
arahy.Tifrunner.gnm1.ann1.FQ33KH Arachis hypogaea HOM05D004793 ORTHO05D038859 5.0e-06 55.1 51 64.7
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 5.0e-06 55.1 144 38.2
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 5.0e-06 55.1 141 36.2
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 5.0e-06 55.1 150 37.3
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 6.6e-06 54.7 161 32.9
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 6.6e-06 54.7 127 39.4
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 8.6e-06 54.3 141 34.0


User provided reference genes

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