Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 3.5e-228 794.7 409 100.0
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 8.9e-83 311.6 400 50.2
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 2.0e-82 310.5 402 49.3
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 2.2e-81 307.0 400 50.2
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 4.9e-81 305.8 400 50.2
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 9.2e-80 301.6 416 48.1
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 3.5e-79 299.7 392 49.5
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 1.3e-78 297.7 404 47.0
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 2.3e-78 297.0 400 47.0
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 6.6e-78 295.4 399 49.1
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 3.6e-76 289.7 402 48.5
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 2.2e-73 280.4 394 46.2
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 2.2e-73 280.4 394 46.2
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 2.2e-73 280.4 402 46.0
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 2.9e-73 280.0 423 46.8
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.1e-72 278.1 394 46.7
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.4e-72 277.7 399 44.9
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 3.2e-72 276.6 421 44.9
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 3.2e-72 276.6 402 45.3
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 4.1e-72 276.2 394 45.4
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 4.1e-72 276.2 394 45.9
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 7.1e-72 275.4 421 43.9
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 9.2e-72 275.0 420 43.8
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 2.7e-71 273.5 400 43.0
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 6.0e-71 272.3 401 44.6
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 7.8e-71 271.9 390 45.4
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 7.8e-71 271.9 396 44.7
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.7e-70 270.8 419 43.4
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.7e-70 270.8 410 44.4
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 3.0e-70 270.0 446 44.4
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 5.1e-70 269.2 400 45.2
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 5.6e-69 265.8 408 44.1
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 7.3e-69 265.4 397 43.6
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.1e-68 263.8 413 43.1
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 2.8e-68 263.5 408 44.9
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 3.6e-68 263.1 431 43.9
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 3.1e-67 260.0 404 43.1
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 4.0e-67 259.6 448 42.4
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 5.2e-67 259.2 408 44.4
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 6.8e-67 258.8 400 43.2
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 6.8e-67 258.8 399 42.4
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.5e-66 257.7 403 44.4
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 2.0e-66 257.3 426 43.0
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.4e-66 256.1 393 43.8
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 4.4e-66 256.1 413 41.6
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 4.4e-66 256.1 407 42.3
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 3.7e-65 253.1 459 41.0
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.9e-65 252.7 393 43.3
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 6.4e-65 252.3 393 43.3
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-64 251.5 411 43.1
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 1.1e-64 251.5 443 41.1
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.9e-64 250.8 415 42.9
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 2.4e-64 250.4 391 43.5
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 7.1e-64 248.8 408 41.7
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.6e-63 247.7 399 43.1
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 7.8e-63 245.4 389 42.9
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.0e-62 245.0 422 43.4
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 2.3e-62 243.8 399 42.1
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 3.0e-62 243.4 439 39.4
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 3.0e-62 243.4 439 39.4
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 3.9e-62 243.0 396 43.9
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 6.6e-62 242.3 403 42.4
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 8.6e-62 241.9 439 39.2
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 4.3e-61 239.6 407 42.0
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 3.6e-60 236.5 410 41.7
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 1.1e-59 235.0 412 42.0
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 1.8e-59 234.2 422 41.7
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 2.4e-59 233.8 424 40.8
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 6.8e-59 232.3 466 37.3
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 8.9e-59 231.9 402 40.0
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 2.0e-58 230.7 427 40.7
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 4.4e-58 229.6 466 37.1
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 7.6e-58 228.8 394 40.6
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 6.4e-57 225.7 395 40.5
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.1e-56 224.9 448 37.1
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.1e-56 224.9 385 40.8
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 5.4e-56 222.6 395 39.7
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 7.1e-56 222.2 366 40.7
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 9.3e-56 221.9 313 46.3
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 2.1e-55 220.7 410 38.8
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.3e-54 218.0 392 40.3
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.7e-54 217.6 347 42.9
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.7e-54 217.6 389 40.1
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.1e-53 214.9 315 42.9
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.1e-53 214.9 315 42.9
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 4.3e-53 213.0 393 40.2
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 9.6e-53 211.8 313 44.4
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.3e-52 211.5 291 46.7
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 1.6e-52 211.1 385 41.0
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 5.8e-50 202.6 382 40.3
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 5.8e-50 202.6 393 39.9
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 2.4e-48 197.2 394 36.0
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 7.1e-48 195.7 257 49.4
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.6e-47 194.5 436 35.3
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 6.0e-47 192.6 414 37.0
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 8.7e-46 188.7 393 37.9
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.5e-45 188.0 471 33.8
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 1.9e-45 187.6 413 36.1
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 5.6e-45 186.0 384 37.8
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 5.6e-45 186.0 411 35.5
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 9.6e-45 185.3 225 49.3
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 3.6e-44 183.3 384 37.8
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 6.2e-44 182.6 223 51.1
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 8.1e-44 182.2 393 37.7
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 5.3e-43 179.5 422 35.3
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 3.4e-42 176.8 324 39.2
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.3e-41 174.9 382 37.2
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 2.9e-41 173.7 408 35.5
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.1e-39 167.5 226 48.2
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 7.9e-39 165.6 379 36.1
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 2.5e-37 160.6 402 34.8
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 7.4e-37 159.1 382 35.1
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 6.2e-36 156.0 220 45.5
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.1e-35 155.2 395 34.4
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 1.7e-33 147.9 396 34.6
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.2e-33 147.5 384 35.4
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.1e-32 145.2 373 32.7
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 7.1e-32 142.5 261 37.5
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 5.1e-30 136.3 379 33.0
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 2.5e-29 134.0 343 31.8
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.8e-27 127.9 351 33.3
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 5.3e-27 126.3 226 37.2
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.0e-25 122.1 226 39.8
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.2e-25 120.9 277 34.7
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 3.8e-25 120.2 403 30.8
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 3.8e-25 120.2 230 40.0
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 4.2e-24 116.7 140 46.4
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 4.2e-24 116.7 333 33.0
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 9.3e-24 115.5 242 36.8
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 9.3e-24 115.5 392 31.1
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.7e-23 114.0 309 32.7
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.5e-21 108.2 212 35.8
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.9e-21 107.8 388 27.3
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 4.3e-21 106.7 210 37.1
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 9.7e-21 105.5 157 41.4
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 2.8e-20 104.0 83 56.6
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 4.8e-20 103.2 233 36.9
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 2.5e-16 90.9 107 47.7
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 3.2e-16 90.5 157 36.3
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 3.2e-16 90.5 232 32.3
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 4.2e-16 90.1 227 34.8
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 4.6e-15 86.7 279 26.2
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.0e-14 85.5 88 44.3
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.5e-13 81.6 107 49.5
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 4.8e-12 76.6 187 33.2
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 6.3e-12 76.3 119 44.5
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.8e-11 74.7 165 35.8
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 6.9e-11 72.8 329 28.3
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 3.4e-10 70.5 181 29.3
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.3e-09 68.6 503 22.1
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 2.9e-09 67.4 119 42.0
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 4.2e-08 63.5 374 22.2
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 5.1e-06 56.6 169 29.0


User provided reference genes

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