Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.7e-197 692.6 373 100.0
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 2.4e-103 379.8 392 58.9
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 5.0e-101 372.1 373 61.7
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.9e-100 370.2 376 60.6
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 6.2e-99 365.2 376 54.8
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 2.3e-98 363.2 376 60.9
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 4.0e-98 362.5 376 54.5
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 5.2e-98 362.1 376 54.5
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 3.1e-90 336.3 375 51.7
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 5.2e-90 335.5 372 57.0
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 4.9e-88 328.9 382 55.0
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 2.7e-86 323.2 374 50.5
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 4.6e-86 322.4 384 49.7
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 7.8e-86 321.6 373 58.4
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 6.6e-85 318.5 379 55.1
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 6.6e-85 318.5 371 51.2
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 2.5e-84 316.6 414 47.1
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.6e-83 313.9 377 55.4
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 5.2e-82 308.9 374 49.7
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 5.2e-82 308.9 372 50.3
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.5e-81 307.4 378 48.7
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.0e-81 307.0 374 49.5
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.6e-81 306.6 380 54.5
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 2.2e-80 303.5 383 53.0
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 8.4e-80 301.6 389 54.0
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.6e-78 297.4 379 47.8
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 3.5e-78 296.2 374 52.1
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.3e-77 293.5 377 47.2
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.3e-77 293.5 372 50.0
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 6.6e-77 292.0 371 48.8
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.1e-76 291.2 368 52.4
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.5e-76 290.8 384 46.4
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 5.6e-76 288.9 379 48.5
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 7.3e-76 288.5 379 48.5
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.6e-75 287.3 390 45.6
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 6.2e-75 285.4 372 49.2
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.8e-74 283.9 372 48.9
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.0e-74 281.6 372 48.9
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 9.0e-74 281.6 393 45.0
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.5e-73 280.8 429 45.5
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.5e-73 280.8 385 45.5
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.5e-73 279.3 377 44.3
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.5e-73 279.3 377 44.3
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 4.5e-73 279.3 431 43.6
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 5.8e-73 278.9 373 51.5
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 8.4e-72 275.0 392 44.1
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 8.4e-72 275.0 381 47.8
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.9e-68 263.8 387 44.7
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.3e-68 263.1 384 44.0
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 3.3e-68 263.1 389 43.7
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.3e-68 262.7 389 46.5
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 6.4e-64 248.8 379 43.3
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.4e-63 247.7 382 42.9
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 6.0e-62 242.3 420 40.7
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.8e-61 240.7 335 46.6
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.0e-61 240.0 385 42.3
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 3.0e-61 240.0 378 41.3
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 6.7e-61 238.8 377 39.5
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.1e-60 238.0 380 42.6
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 2.5e-60 236.9 383 45.2
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.3e-60 236.5 377 41.6
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 3.7e-59 233.0 386 40.2
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.7e-59 233.0 390 44.6
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 3.1e-58 229.9 369 39.6
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 5.3e-58 229.2 406 39.2
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.5e-57 227.6 383 41.3
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.4e-55 221.1 382 42.1
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.2e-55 219.5 395 42.3
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.5e-54 216.5 384 36.7
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 6.0e-54 215.7 395 38.5
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.0e-53 214.9 382 37.7
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.3e-53 214.5 379 39.1
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.3e-53 213.8 380 37.6
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.1e-53 212.6 378 38.4
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 6.7e-53 212.2 329 39.5
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 6.7e-53 212.2 329 39.5
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.5e-52 211.1 377 37.1
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.5e-52 211.1 399 38.6
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.3e-52 209.9 377 39.0
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 4.3e-52 209.5 378 40.5
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 9.7e-52 208.4 374 39.0
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.6e-51 207.6 391 41.9
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.3e-51 205.7 382 38.2
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.1e-50 204.9 383 37.1
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 6.9e-50 202.2 378 39.4
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 5.9e-49 199.1 386 35.0
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.8e-48 196.4 380 37.1
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 5.0e-48 196.1 400 38.0
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 7.2e-47 192.2 377 36.6
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.1e-46 190.7 391 36.1
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.7e-46 190.3 379 36.7
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 3.6e-46 189.9 378 36.8
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.0e-45 188.3 373 35.4
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.4e-45 188.0 371 39.4
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.4e-45 188.0 378 35.4
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 3.9e-45 186.4 384 35.4
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.5e-44 184.5 134 71.6
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.5e-44 183.7 375 36.0
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 3.3e-44 183.3 380 36.3
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 9.7e-44 181.8 386 40.2
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.3e-43 181.4 375 36.3
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.7e-43 181.0 371 36.7
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.7e-43 179.9 381 36.2
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.1e-42 176.8 380 35.8
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.1e-42 176.4 393 32.8
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 6.9e-42 175.6 381 33.9
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 2.0e-41 174.1 370 35.9
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.4e-41 173.3 376 36.2
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 5.0e-40 169.5 379 37.7
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 5.5e-39 166.0 199 52.3
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.6e-38 164.5 379 34.6
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.6e-38 164.5 379 34.6
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 2.7e-38 163.7 379 33.8
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 7.9e-38 162.2 330 36.1
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.4e-37 161.4 200 50.0
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 8.8e-37 158.7 111 73.0
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.1e-36 158.3 377 36.3
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.0e-36 157.5 200 51.5
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 1.3e-35 154.8 498 29.7
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.7e-35 154.5 346 34.7
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.7e-35 154.5 346 34.1
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 4.8e-35 152.9 440 34.1
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-34 151.8 379 33.2
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.8e-34 151.0 151 52.3
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.8e-34 151.0 151 52.3
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 4.1e-34 149.8 384 34.1
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 4.1e-34 149.8 384 34.1
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 5.3e-34 149.4 348 34.8
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 7.0e-34 149.1 396 33.1
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 9.1e-34 148.7 125 58.4
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.0e-33 147.5 375 32.5
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.3e-32 144.8 384 33.1
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 2.2e-32 144.1 193 45.1
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 5.0e-32 142.9 332 35.8
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 6.5e-32 142.5 107 70.1
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 8.5e-32 142.1 126 55.6
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 4.2e-31 139.8 110 67.3
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 4.2e-31 139.8 110 67.3
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 4.7e-30 136.3 160 46.9
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 4.7e-30 136.3 160 46.9
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.8e-29 134.4 100 66.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.9e-29 133.3 498 27.3
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 8.8e-29 132.1 113 62.8
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 1.1e-28 131.7 113 57.5
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-28 131.3 142 49.3
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-28 131.3 142 49.3
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.5e-28 131.3 142 49.3
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 4.4e-28 129.8 137 52.6
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 5.7e-28 129.4 106 63.2
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 9.7e-28 128.6 127 56.7
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 2.8e-27 127.1 351 36.8
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 5.3e-26 122.9 425 28.9
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 9.1e-26 122.1 73 84.9
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.6e-25 121.3 111 57.7
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 2.5e-23 114.0 121 52.1
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.5e-23 114.0 157 40.8
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 3.2e-23 113.6 109 56.0
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 3.2e-23 113.6 73 76.7
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 9.4e-23 112.1 116 52.6
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 5.2e-21 106.3 382 29.1
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 5.2e-21 106.3 98 49.0
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 6.7e-21 105.9 172 37.8
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.3e-19 101.7 150 36.0
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 3.5e-17 93.6 92 51.1
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 3.5e-17 93.6 92 52.2
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 4.5e-17 93.2 92 50.0
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.0e-16 92.0 216 32.9
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.9e-15 87.8 152 36.2
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 1.9e-15 87.8 127 37.0
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.7e-14 83.2 116 43.1
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.4e-10 70.9 43 79.1
Sabra16G0293500 Salix brachista HOM05D003874 ORTHO05D004545 4.5e-09 66.6 90 43.3
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 5.0e-08 63.2 129 31.8
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 2.5e-07 60.8 134 34.3
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 9.5e-07 58.9 104 35.6
SEGI_24660 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.2e-06 58.5 163 28.2
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 3.6e-06 57.0 69 42.0
unitig_37.g13077 Utricularia gibba HOM05D003874 ORTHO05D030560 8.0e-06 55.8 106 39.6


User provided reference genes

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