Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.5e-256 889.0 455 100.0
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 3.2e-190 668.7 448 74.3
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 9.3e-190 667.2 436 75.9
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 6.0e-189 664.5 441 75.5
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 2.3e-188 662.5 437 74.1
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 9.6e-187 657.1 441 75.1
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 1.3e-186 656.8 441 75.1
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 3.6e-186 655.2 448 72.1
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 3.6e-186 655.2 448 72.1
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 3.6e-186 655.2 450 72.0
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 4.8e-186 654.8 448 72.8
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 1.5e-184 649.8 448 72.5
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 2.0e-184 649.4 437 73.0
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 2.4e-182 642.5 442 72.9
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 3.2e-182 642.1 448 72.3
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 7.1e-182 641.0 441 72.1
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 9.3e-182 640.6 463 68.9
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 2.1e-181 639.4 448 71.0
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 2.7e-181 639.0 448 70.5
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 3.5e-181 638.6 436 73.9
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 6.7e-180 634.4 448 70.5
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 2.8e-178 629.0 448 71.2
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 6.2e-178 627.9 467 68.3
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 2.6e-176 622.5 448 69.6
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 1.2e-173 613.6 449 68.2
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 6.7e-172 607.8 446 67.3
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 3.3e-171 605.5 448 68.8
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 5.6e-171 604.7 466 67.2
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 5.6e-171 604.7 445 69.2
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 9.6e-171 604.0 437 67.7
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 9.6e-171 604.0 442 67.9
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 3.1e-169 599.0 448 66.7
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 1.5e-168 596.7 437 68.4
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 2.0e-168 596.3 448 66.5
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.0e-167 594.0 462 64.7
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 2.9e-167 592.4 448 65.4
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 5.5e-166 588.2 448 65.8
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 1.6e-165 586.6 442 67.6
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 2.1e-165 586.3 448 65.6
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 3.5e-165 585.5 441 67.8
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 6.0e-165 584.7 469 63.5
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 6.0e-165 584.7 434 65.9
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 1.0e-164 583.9 468 64.1
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 3.0e-164 582.4 448 64.3
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 3.9e-164 582.0 448 67.0
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 1.1e-163 580.5 448 65.4
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 1.9e-163 579.7 448 67.0
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 9.7e-163 577.4 441 66.4
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 1.8e-161 573.2 435 65.5
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 9.0e-161 570.9 435 64.8
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 9.0e-161 570.9 440 65.9
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 4.5e-160 568.5 448 64.1
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 4.5e-160 568.5 457 63.9
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 5.9e-160 568.2 448 62.5
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.0e-159 567.4 442 66.7
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 1.0e-159 567.4 469 62.7
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 2.2e-159 566.2 439 66.1
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 2.9e-159 565.8 448 63.6
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 3.8e-159 565.5 468 62.2
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 3.8e-159 565.5 448 65.4
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 8.5e-159 564.3 437 67.5
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 1.0e-156 557.4 446 62.1
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 2.3e-156 556.2 503 58.1
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 3.0e-156 555.8 469 61.2
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 6.7e-156 554.7 486 61.1
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 6.7e-156 554.7 446 62.1
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 3.7e-154 548.9 437 62.9
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 1.8e-153 546.6 435 63.0
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 5.9e-152 541.6 468 61.3
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 9.4e-150 534.3 468 59.2
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.7e-146 523.5 434 62.0
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 2.2e-146 523.1 445 61.3
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 7.7e-144 514.6 491 57.2
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 1.3e-143 513.8 438 58.4
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 5.0e-143 511.9 387 66.4
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 8.5e-143 511.1 492 57.5
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 5.5e-142 508.4 454 60.4
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 1.6e-141 506.9 443 61.2
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 3.6e-141 505.8 443 60.9
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 1.4e-140 503.8 407 64.4
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 1.8e-140 503.4 444 60.6
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 3.3e-139 499.2 461 56.8
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 9.7e-139 497.7 442 60.2
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.4e-137 493.0 450 57.3
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.2e-136 490.7 405 61.2
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.1e-133 479.9 450 56.2
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 3.3e-131 472.6 443 58.0
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.5e-123 447.2 460 52.8
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 4.4e-123 445.7 468 52.1
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.9e-118 430.3 288 72.9
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 4.0e-108 396.0 306 63.4
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 1.5e-107 394.0 417 54.4
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 3.4e-107 392.9 290 66.6
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 4.9e-106 389.0 302 62.3
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.9e-105 387.1 441 47.2
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.6e-104 382.5 299 62.5
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 1.3e-103 380.9 442 44.6
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.6e-99 366.7 448 44.2
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 3.2e-89 333.2 252 65.9
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 3.2e-89 333.2 252 65.9
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 2.8e-85 320.1 416 45.0
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 1.1e-81 308.1 287 56.4
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 4.2e-81 306.2 204 74.0
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.7e-79 300.8 407 43.2
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.0e-76 289.7 476 37.4
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.7e-71 274.2 365 43.6
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 3.9e-71 273.1 473 36.6
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.4e-67 260.0 212 60.4
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 1.1e-54 218.4 469 30.7
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 2.5e-54 217.2 478 31.8
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 2.3e-47 194.1 135 69.6
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.7e-47 192.6 130 70.0
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 1.1e-41 175.3 141 64.5
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 1.8e-39 167.9 123 64.2
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 5.7e-38 162.9 448 29.2
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.4e-33 148.3 113 64.6
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 5.7e-30 136.3 85 75.3
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.4e-28 131.7 91 70.3
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 1.8e-20 104.8 165 38.8
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 2.4e-20 104.4 49 100.0
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 7.7e-19 99.4 88 61.4
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 5.0e-18 96.7 71 69.0
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 5.5e-17 93.2 87 58.6
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 5.5e-17 93.2 87 58.6
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 5.5e-17 93.2 90 47.8
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 2.1e-16 91.3 67 70.1
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 4.7e-16 90.1 115 51.3
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 1.0e-15 89.0 114 48.2
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 6.8e-15 86.3 368 24.2
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.6e-14 84.3 68 66.2
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.4e-12 78.6 75 50.7
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 2.0e-11 74.7 51 74.5
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 4.2e-09 67.0 73 50.7
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 3.6e-08 63.9 87 48.3
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 8.0e-08 62.8 266 26.7
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 1.4e-07 62.0 36 77.8
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 2.3e-07 61.2 74 43.2
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 8.8e-07 59.3 93 43.0


User provided reference genes

Program Settings