Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 2.6e-47 191.8 105 100.0
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 3.0e-19 98.6 101 58.4
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 2.6e-18 95.5 81 65.4
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 3.4e-18 95.1 74 68.9
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 7.5e-18 94.0 69 71.0
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 3.7e-17 91.7 78 62.8
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 4.8e-17 91.3 82 61.0
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 1.1e-16 90.1 100 53.0
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 1.1e-16 90.1 90 58.9
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 2.4e-16 89.0 79 62.0
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 3.1e-16 88.6 70 65.7
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 4.1e-16 88.2 68 69.1
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 4.1e-16 88.2 100 56.0
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 7.0e-16 87.4 98 56.1
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 9.1e-16 87.0 82 54.9
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 9.1e-16 87.0 100 55.0
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 1.2e-15 86.7 70 62.9
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 1.6e-15 86.3 82 54.9
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 3.5e-15 85.1 79 55.7
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 4.5e-15 84.7 79 55.7
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 4.5e-15 84.7 83 56.6
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 4.5e-15 84.7 81 54.3
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 5.9e-15 84.3 79 54.4
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 5.9e-15 84.3 91 54.9
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 7.7e-15 84.0 72 59.7
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 1.0e-14 83.6 79 55.7
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 1.0e-14 83.6 68 67.6
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.0e-14 83.6 68 67.6
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 1.3e-14 83.2 92 51.1
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 1.7e-14 82.8 69 62.3
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 1.7e-14 82.8 88 56.8
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 1.7e-14 82.8 98 54.1
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 2.2e-14 82.4 74 55.4
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 2.2e-14 82.4 74 55.4
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 2.2e-14 82.4 82 54.9
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 2.9e-14 82.0 79 54.4
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 2.9e-14 82.0 74 55.4
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 2.9e-14 82.0 70 58.6
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 5.0e-14 81.3 74 55.4
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 5.0e-14 81.3 74 54.1
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 6.5e-14 80.9 70 58.6
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 6.5e-14 80.9 70 64.3
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 6.5e-14 80.9 85 51.8
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 1.1e-13 80.1 100 52.0
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.1e-13 80.1 98 51.0
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 1.5e-13 79.7 98 50.0
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.9e-13 79.3 103 47.6
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 2.5e-13 79.0 87 49.4
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 2.5e-13 79.0 64 65.6
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 2.5e-13 79.0 88 53.4
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 3.2e-13 78.6 83 51.8
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 4.2e-13 78.2 70 55.7
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 7.2e-13 77.4 85 49.4
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 7.2e-13 77.4 69 58.0
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 9.5e-13 77.0 83 49.4
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 9.5e-13 77.0 66 62.1
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.6e-12 76.3 107 45.8
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.6e-12 76.3 107 45.8
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 3.6e-12 75.1 96 50.0
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 3.6e-12 75.1 70 58.6
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 4.7e-12 74.7 74 54.1
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 6.1e-12 74.3 81 53.1
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 6.1e-12 74.3 79 53.2
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 8.0e-12 73.9 74 54.1
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 8.0e-12 73.9 79 48.1
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 1.0e-11 73.6 69 55.1
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 1.4e-11 73.2 99 46.5
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 8.8e-11 70.5 78 51.3
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 2.0e-10 69.3 70 51.4
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 2.0e-10 69.3 70 51.4
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.6e-10 68.9 74 54.1
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 3.4e-10 68.6 63 58.7
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 1.7e-09 66.2 70 50.0
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 1.7e-09 66.2 97 46.4
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 3.7e-09 65.1 67 55.2
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 4.9e-09 64.7 76 46.1
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 6.3e-09 64.3 72 47.2
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 1.8e-08 62.8 95 44.2
Aqoxy6G00664 Aquilegia oxysepala HOM05D007802 ORTHO05D009879 7.0e-08 60.8 126 34.1
BcaC02g07465 Brassica carinata HOM05D007802 ORTHO05D009879 7.0e-08 60.8 69 50.7
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 9.2e-08 60.5 44 65.9
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 1.2e-07 60.1 72 45.8
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 2.0e-07 59.3 74 45.9
Os06g0651200 Oryza sativa ssp. japonica HOM05D007802 ORTHO05D009879 1.3e-06 56.6 74 43.2
Zm00001eb388760 Zea mays HOM05D007802 ORTHO05D009879 3.8e-06 55.1 56 53.6


User provided reference genes

Program Settings