Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 8.8e-57 223.4 113 100.0
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 7.7e-45 183.7 104 86.5
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 2.2e-44 182.2 104 85.6
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 2.9e-44 181.8 104 86.5
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 1.1e-43 179.9 106 83.0
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.1e-43 179.9 104 84.6
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.9e-43 179.1 104 84.6
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.5e-43 178.7 104 84.6
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 4.2e-43 177.9 104 83.7
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 4.2e-43 177.9 104 85.6
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 4.2e-43 177.9 104 83.7
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 5.5e-43 177.6 104 83.7
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 9.4e-43 176.8 104 83.7
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 9.4e-43 176.8 104 82.7
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 9.4e-43 176.8 104 85.6
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 9.4e-43 176.8 104 83.7
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.2e-42 176.4 104 82.7
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.2e-42 176.4 104 81.7
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 1.6e-42 176.0 104 83.7
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 2.1e-42 175.6 104 84.6
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.7e-42 175.3 104 80.8
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 3.6e-42 174.9 104 79.8
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 3.6e-42 174.9 104 80.8
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.6e-42 174.9 104 81.7
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 4.7e-42 174.5 104 79.8
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 4.7e-42 174.5 104 81.7
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 4.7e-42 174.5 104 81.7
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.7e-42 174.5 104 82.7
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.7e-42 174.5 104 82.7
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 6.1e-42 174.1 104 83.7
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 8.0e-42 173.7 104 81.7
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 1.0e-41 173.3 104 81.7
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 1.0e-41 173.3 104 81.7
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 1.0e-41 173.3 104 81.7
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.0e-41 173.3 104 80.8
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.4e-41 172.9 104 80.8
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.4e-41 172.9 104 81.7
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 1.8e-41 172.6 101 83.2
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 1.8e-41 172.6 104 81.7
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 1.8e-41 172.6 104 81.7
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 2.3e-41 172.2 104 81.7
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 2.3e-41 172.2 104 83.7
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.3e-41 172.2 104 80.8
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 2.3e-41 172.2 104 81.7
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.3e-41 172.2 104 79.8
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 3.0e-41 171.8 104 80.8
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 3.0e-41 171.8 104 80.8
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 3.0e-41 171.8 104 80.8
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 3.0e-41 171.8 104 80.8
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 3.0e-41 171.8 104 80.8
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 4.0e-41 171.4 104 79.8
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 5.2e-41 171.0 104 77.9
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 5.2e-41 171.0 104 77.9
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 5.2e-41 171.0 104 78.8
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 5.2e-41 171.0 104 77.9
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 8.8e-41 170.2 104 78.8
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 1.2e-40 169.9 104 78.8
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.2e-40 169.9 104 79.8
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.5e-40 169.5 104 79.8
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.0e-40 169.1 101 79.2
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 2.0e-40 169.1 104 79.8
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 2.0e-40 169.1 104 79.8
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 2.6e-40 168.7 104 80.8
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.6e-40 168.7 104 79.8
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 5.7e-40 167.5 104 78.8
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 7.5e-40 167.2 104 76.0
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 7.5e-40 167.2 104 76.9
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 7.5e-40 167.2 104 76.9
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 9.8e-40 166.8 104 78.8
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.3e-39 166.4 104 76.9
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 1.3e-39 166.4 104 78.8
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.2e-39 165.6 103 76.7
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.2e-39 165.6 103 76.7
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.2e-39 165.6 104 76.9
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 2.8e-39 165.2 104 77.9
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 2.8e-39 165.2 104 76.0
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 3.7e-39 164.9 104 76.0
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.7e-39 164.9 99 79.8
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 4.8e-39 164.5 104 76.0
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 6.3e-39 164.1 104 76.9
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 8.3e-39 163.7 104 76.0
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 1.1e-38 163.3 113 75.2
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.1e-38 163.3 104 77.9
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 1.1e-38 163.3 104 75.0
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 1.1e-38 163.3 104 75.0
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.1e-38 163.3 104 76.0
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 2.4e-38 162.2 104 78.8
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 3.1e-38 161.8 104 76.0
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 3.1e-38 161.8 104 75.0
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.1e-38 161.8 100 78.0
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 7.0e-38 160.6 104 76.0
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 9.1e-38 160.2 104 76.0
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.6e-37 159.5 104 75.0
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 1.6e-37 159.5 103 73.8
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.0e-37 159.1 104 75.0
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.5e-37 158.3 104 72.1
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 4.5e-37 157.9 104 77.9
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 5.9e-37 157.5 104 75.0
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 7.7e-37 157.1 104 74.0
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.0e-36 156.8 104 76.0
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.7e-36 156.0 104 74.0
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 2.2e-36 155.6 105 72.4
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.2e-36 155.6 104 70.2
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 3.8e-36 154.8 104 72.1
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 5.5e-35 151.0 104 73.1
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.6e-34 149.4 121 64.5
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 2.1e-34 149.1 92 79.3
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.6e-34 148.3 128 61.7
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 4.7e-34 147.9 104 71.2
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 6.1e-34 147.5 104 70.2
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 6.1e-34 147.5 104 70.2
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 6.1e-34 147.5 104 70.2
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 6.1e-34 147.5 104 71.2
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.4e-33 146.4 104 71.2
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.4e-33 146.4 104 71.2
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 3.0e-33 145.2 104 67.3
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 4.0e-33 144.8 101 68.3
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.7e-31 138.3 93 71.0
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 6.3e-31 137.5 140 54.3
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 8.3e-31 137.1 104 61.5
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 1.1e-30 136.7 164 48.8
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 4.1e-30 134.8 104 62.5
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 3.5e-29 131.7 105 60.0
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 5.9e-29 131.0 73 89.0
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.7e-28 129.4 96 64.6
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.3e-27 125.2 100 60.0
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.1e-26 122.5 101 64.4
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.4e-25 119.8 70 81.4
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.0e-24 115.9 99 54.5
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 8.3e-23 110.5 94 59.6
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 7.0e-22 107.5 94 58.5
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.6e-18 96.3 58 81.0
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.7e-18 94.7 58 79.3
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 2.3e-17 92.4 56 80.4
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.0e-17 91.7 62 74.2
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.2e-16 90.1 55 78.2
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 3.4e-16 88.6 51 82.4
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 3.7e-15 85.1 52 76.9
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 3.2e-14 82.0 49 79.6
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 3.9e-12 75.1 74 50.0
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 5.0e-12 74.7 53 66.0
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 8.6e-12 73.9 47 74.5
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 3.1e-09 65.5 90 40.0
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.3e-07 60.1 83 37.3
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.3e-07 60.1 83 37.3
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.7e-07 58.5 48 54.2


User provided reference genes

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