Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc21.134 Carica papaya HOM05D004532 ORTHO05D000028 6.4e-57 223.8 107 100.0
Duzib116G0629 Durio zibethinus HOM05D004532 ORTHO05D000028 3.8e-33 144.8 104 66.3
Thecc.08G094200 Theobroma cacao HOM05D004532 ORTHO05D000028 3.8e-33 144.8 104 66.3
Hma1.2p1_0923F.1_g237150 Hydrangea macrophylla HOM05D000042 ORTHO05D000028 3.9e-30 134.8 96 67.7
MSTRG.1048 Avicennia marina HOM05D000042 ORTHO05D000028 1.6e-28 129.4 101 60.4
COL.COLO4_28564 Corchorus olitorius HOM05D000021 ORTHO05D000028 3.6e-28 128.3 105 61.9
Lj4A761T86 Lonicera japonica HOM05D004532 ORTHO05D000028 1.7e-25 119.4 102 60.8
Dinv35909 Davidia involucrata HOM05D001837 ORTHO05D000028 2.2e-25 119.0 105 57.1
Haze_18093 Corylus avellana HOM05D004532 ORTHO05D000028 1.1e-24 116.7 117 55.6
Actinidia38089 Actinidia chinensis HOM05D000042 ORTHO05D000028 4.2e-24 114.8 104 53.8
ECA246G0663 Erigeron canadensis HOM05D000086 ORTHO05D002912 1.6e-23 112.8 103 55.3
GSVIVG01009393001 Vitis vinifera HOM05D001837 ORTHO05D000028 2.7e-23 112.1 102 52.9
Manes.18G043300 Manihot esculenta HOM05D000042 ORTHO05D000028 3.5e-23 111.7 105 55.2
Cfa018031 Carpinus fangiana HOM05D004532 ORTHO05D000028 4.6e-23 111.3 101 57.4
CAN.G1054.7 Capsicum annuum HOM05D000042 ORTHO05D000028 1.0e-22 110.2 110 52.7
Nitab4.5_0000934g0190 Nicotiana tabacum HOM05D000042 ORTHO05D000028 1.0e-22 110.2 114 52.6
Prupe.1G427500 Prunus persica HOM05D000042 ORTHO05D000028 1.0e-22 110.2 102 57.8
Sopen04g031890 Solanum pennellii HOM05D000042 ORTHO05D000028 2.3e-22 109.0 110 50.9
CiPaw.15G048700 Carya illinoinensis HOM05D000042 ORTHO05D000028 5.1e-22 107.8 102 52.0
Oeu040891.2 Olea europaea HOM05D000042 ORTHO05D000028 5.1e-22 107.8 101 57.4
HanXRQChr05g0150571 Helianthus annuus HOM05D001837 ORTHO05D000028 8.7e-22 107.1 102 54.9
Peaxi162Scf00848g00319 Petunia axillaris HOM05D004532 ORTHO05D000028 8.7e-22 107.1 112 48.2
Ciclev10001730m.g Citrus clementina HOM05D001837 ORTHO05D000028 1.5e-21 106.3 103 52.4
HanXRQChr15g0483111 Helianthus annuus HOM05D001837 ORTHO05D000028 1.5e-21 106.3 102 52.0
Migut.C00517 Erythranthe guttata HOM05D000042 ORTHO05D000028 1.9e-21 105.9 100 50.0
Oeu061838.1 Olea europaea HOM05D000042 ORTHO05D000028 1.9e-21 105.9 109 52.3
TAR625G1000 Trochodendron aralioides HOM05D001837 ORTHO05D000028 4.3e-21 104.8 100 52.0
Solyc04g078300.3 Solanum lycopersicum HOM05D000042 ORTHO05D000028 7.4e-21 104.0 110 49.1
Lsat_1_v5_gn_6_109820 Lactuca sativa HOM05D001837 ORTHO05D000028 1.6e-20 102.8 101 47.5
Gorai.009G216900 Gossypium raimondii HOM05D000042 ORTHO05D000028 4.8e-20 101.3 103 55.3
Gohir.A05G207000 Gossypium hirsutum HOM05D000042 ORTHO05D000028 6.2e-20 100.9 103 54.4
arahy.Tifrunner.gnm1.ann1.JU2Z2L Arachis hypogaea HOM05D004532 ORTHO05D000028 2.4e-19 99.0 95 53.7
Gohir.D05G210450 Gossypium hirsutum HOM05D004532 ORTHO05D000028 2.4e-19 99.0 103 53.4
TPR.G25555 Trifolium pratense HOM05D000042 ORTHO05D000028 4.0e-19 98.2 102 52.0
Glyma.04G043800 Glycine max HOM05D000042 ORTHO05D000028 9.0e-19 97.1 93 55.9
Ca_15922_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000028 1.5e-18 96.3 102 51.0
arahy.Tifrunner.gnm1.ann1.TIWB5X Arachis hypogaea HOM05D000042 ORTHO05D000028 2.0e-18 95.9 90 52.2
Phvul.009G069300 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 2.6e-18 95.5 102 51.0
Potri.014G021000 Populus trichocarpa HOM05D004532 ORTHO05D000028 3.4e-18 95.1 106 49.1
DCAR_008840 Daucus carota HOM05D042413 ORTHO05D000028 9.9e-18 93.6 105 45.7
TWI56G1245 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 9.9e-18 93.6 103 49.5
Nitab4.5_0007275g0010 Nicotiana tabacum HOM05D000042 ORTHO05D000028 6.4e-17 90.9 113 45.1
Cc10_g05320 Coffea canephora HOM05D001837 ORTHO05D000028 8.4e-17 90.5 102 48.0
SGA_v2.0_scaffold26G11297 Striga asiatica HOM05D000042 ORTHO05D000028 3.2e-16 88.6 101 48.5
Lj1g0023377 Lotus japonicus HOM05D000042 ORTHO05D000028 5.5e-16 87.8 102 48.0
Medtr3g102570 Medicago truncatula HOM05D001837 ORTHO05D000028 3.5e-15 85.1 102 47.1
Gohir.D02G089900 Gossypium hirsutum HOM05D000042 ORTHO05D000028 1.3e-14 83.2 100 45.0
Gorai.005G100600 Gossypium raimondii HOM05D000042 ORTHO05D000028 2.3e-14 82.4 100 45.0
CANSAT25G2386 Cannabis sativa HOM05D000042 ORTHO05D000028 3.9e-14 81.6 101 48.5
Psat5g040360 Pisum sativum HOM05D000042 ORTHO05D000028 8.7e-14 80.5 104 44.2
CSS0035363 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.5e-13 79.7 102 44.1
PGR083G1161 Punica granatum HOM05D001837 ORTHO05D000028 1.9e-13 79.3 100 45.0
CSS0046201 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 4.3e-13 78.2 108 41.7
arahy.Tifrunner.gnm1.ann1.K7VJRA Arachis hypogaea HOM05D000042 ORTHO05D000028 6.9e-11 70.9 40 80.0
Hma1.2p1_2300F.1_g319215 Hydrangea macrophylla HOM05D004532 ORTHO05D000028 1.0e-09 67.0 38 81.6
RcHm_v2.0_Chr6g0295381 Rosa chinensis HOM05D068235 ORTHO05D046661 1.7e-09 66.2 101 42.6
PSO541G4552 Papaver somniferum HOM05D004532 ORTHO05D000028 6.5e-09 64.3 49 55.1
PSO675G3764 Papaver somniferum HOM05D000042 ORTHO05D000028 7.1e-08 60.8 87 40.2
Nn5g30466 Nelumbo nucifera HOM05D000042 ORTHO05D000028 1.2e-07 60.1 104 38.5
FAN27G2022 Fragaria x ananassa HOM05D000042 ORTHO05D000028 2.1e-07 59.3 100 40.0
Actinidia08265 Actinidia chinensis HOM05D001837 ORTHO05D000028 3.5e-07 58.5 40 60.0


User provided reference genes

Program Settings