Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 0.0e+00 1415.6 813 100.0
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 5.1e-199 698.7 744 58.1
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 2.2e-189 666.8 686 57.6
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 3.2e-185 652.9 761 54.8
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 9.4e-185 651.4 761 54.7
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.0e-183 647.9 761 54.5
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 7.4e-182 641.7 751 53.3
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 2.1e-176 623.6 805 52.4
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.4e-174 616.3 794 54.0
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 5.3e-172 609.0 789 52.5
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 4.5e-171 605.9 704 52.6
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 3.2e-169 599.7 848 46.9
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 5.5e-169 599.0 764 52.4
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.4e-167 594.3 856 49.9
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 1.2e-166 591.3 820 50.4
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.6e-163 580.9 773 49.5
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.7e-162 577.4 749 50.3
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 5.5e-161 572.4 675 51.7
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 1.3e-157 561.2 798 49.1
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.9e-153 547.4 721 45.8
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 8.0e-152 542.0 724 45.3
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 3.4e-150 536.6 728 46.4
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 9.2e-148 528.5 685 50.7
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.6e-147 527.7 695 45.6
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 1.6e-147 527.7 804 45.4
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 2.0e-147 527.3 751 45.3
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 2.7e-147 526.9 759 48.0
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 3.0e-146 523.5 704 46.4
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.1e-145 521.5 776 46.9
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.1e-145 521.5 709 49.4
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 5.6e-145 519.2 785 47.9
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 7.3e-145 518.8 812 45.2
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 9.5e-145 518.5 796 48.2
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.2e-144 518.1 791 47.0
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 3.6e-144 516.5 746 49.5
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.8e-143 514.2 782 46.7
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 2.0e-142 510.8 798 48.6
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 2.0e-142 510.8 785 45.4
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 3.4e-142 510.0 748 42.1
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.3e-141 508.1 758 47.1
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 1.3e-141 508.1 696 48.0
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.9e-140 504.2 766 46.1
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.9e-140 504.2 826 43.7
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 3.0e-138 496.9 858 45.6
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 5.1e-138 496.1 758 45.1
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.5e-137 494.6 776 47.2
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 4.7e-136 489.6 714 45.9
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 8.9e-135 485.3 769 46.3
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 3.4e-134 483.4 793 47.5
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 5.8e-134 482.6 707 44.0
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 5.8e-134 482.6 774 43.5
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 9.9e-134 481.9 789 42.5
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.3e-133 481.5 795 47.7
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 4.9e-133 479.6 837 44.6
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 4.9e-133 479.6 810 47.0
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 8.3e-133 478.8 681 42.9
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.1e-132 478.4 700 42.4
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.2e-131 474.9 703 41.8
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.6e-131 474.6 746 43.4
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 4.6e-131 473.0 770 43.8
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 7.8e-131 472.2 688 42.6
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 3.0e-130 470.3 799 41.4
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 1.1e-127 461.8 679 42.9
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.4e-127 461.5 753 44.2
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.4e-126 456.8 671 46.3
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.4e-124 451.4 760 39.6
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 4.3e-121 439.9 694 46.0
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 1.3e-120 438.3 770 42.3
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 3.6e-120 436.8 713 46.6
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 4.8e-120 436.4 768 42.7
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.1e-119 433.7 716 47.8
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 2.0e-118 431.0 693 43.1
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 1.7e-117 427.9 743 39.2
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 6.4e-117 426.0 731 44.9
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 4.2e-116 423.3 682 40.8
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 2.1e-115 421.0 914 40.9
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 6.0e-115 419.5 678 42.9
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 2.3e-114 417.5 777 40.2
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 3.9e-114 416.8 777 40.2
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 3.9e-114 416.8 718 44.3
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 6.6e-114 416.0 628 48.6
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.1e-113 415.2 611 40.4
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 1.9e-113 414.5 777 40.0
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 4.3e-113 413.3 822 36.3
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 7.3e-113 412.5 686 40.1
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 2.1e-112 411.0 694 39.3
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 1.5e-110 404.8 729 41.7
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 3.4e-110 403.7 739 39.9
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 9.9e-110 402.1 726 36.2
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 2.2e-109 401.0 709 38.2
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 6.4e-109 399.4 728 40.9
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 2.2e-101 374.4 719 37.8
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 3.2e-100 370.5 744 36.2
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 2.1e-99 367.9 848 33.7
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 5.1e-98 363.2 734 35.6
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 8.7e-98 362.5 705 42.6
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 4.8e-96 356.7 724 35.4
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 1.7e-93 348.2 739 34.0
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.9e-92 344.7 699 34.5
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 2.5e-92 344.4 733 33.3
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 4.6e-91 340.1 825 35.2
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.1e-91 339.7 691 34.3
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 8.2e-88 329.3 707 35.1
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 2.6e-86 324.3 783 39.0
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.0e-85 322.4 827 32.9
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.2e-83 315.5 583 42.9
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 2.3e-82 311.2 292 58.2
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 7.4e-81 306.2 714 34.9
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.3e-80 305.4 267 59.2
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 4.8e-80 303.5 841 32.3
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 3.1e-79 300.8 921 32.9
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 6.9e-79 299.7 710 36.1
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 2.0e-78 298.1 774 31.8
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 9.4e-76 289.3 757 35.9
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 8.0e-67 259.6 435 45.3
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.5e-65 255.4 685 29.3
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.4e-63 248.8 208 59.6
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 3.5e-62 244.2 763 29.1
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 7.2e-52 209.9 380 38.9
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.2e-49 202.6 175 54.9
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 8.3e-48 196.4 262 44.7
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.1e-47 196.1 724 25.1
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 8.6e-45 186.4 393 41.2
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 8.6e-37 159.8 312 36.9
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 8.6e-37 159.8 143 58.0
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.3e-36 157.5 168 48.8
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.9e-31 142.1 151 53.0
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 3.2e-31 141.4 135 58.5
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 7.8e-30 136.7 806 26.2
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 7.3e-28 130.2 294 34.7
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 2.1e-27 128.6 220 36.8
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.4e-26 125.9 292 32.9
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 4.9e-24 117.5 222 34.2
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 3.3e-20 104.8 207 35.7
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.7e-16 92.4 224 33.9
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 4.1e-15 87.8 141 38.3
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.0e-13 83.2 76 63.2
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 3.9e-13 81.3 153 35.9
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 2.4e-10 72.0 62 51.6
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 7.1e-07 60.5 61 54.1
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 3.5e-06 58.2 100 36.0
CDE07G1449 Ceratophyllum demersum HOM05D000082 ORTHO05D001639 4.6e-06 57.8 56 48.2


User provided reference genes

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