Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc207.7 Carica papaya HOM05D003399 ORTHO05D003393 6.3e-130 467.6 267 100.0
Thecc.02G195400 Theobroma cacao HOM05D003399 ORTHO05D003393 6.1e-40 168.7 282 43.6
Manes.08G102600 Manihot esculenta HOM05D003399 ORTHO05D003393 1.4e-39 167.5 295 43.1
Duzib248G1620 Durio zibethinus HOM05D003399 ORTHO05D003393 1.1e-36 157.9 288 43.4
CiPaw.05G103400 Carya illinoinensis HOM05D003399 ORTHO05D003393 4.1e-36 156.0 281 40.9
COL.COLO4_07618 Corchorus olitorius HOM05D003399 ORTHO05D003393 2.6e-35 153.3 299 42.5
Manes.09G186300 Manihot esculenta HOM05D003399 ORTHO05D003393 1.9e-33 147.1 295 39.7
QL03p050027 Quercus lobata HOM05D003399 ORTHO05D003393 4.2e-33 146.0 304 38.5
Potri.001G062700 Populus trichocarpa HOM05D003399 ORTHO05D003393 5.5e-33 145.6 309 38.2
Duzib132G1194 Durio zibethinus HOM05D003399 ORTHO05D003393 7.2e-33 145.2 277 41.9
Cfa009429 Carpinus fangiana HOM05D003399 ORTHO05D003393 3.6e-32 142.9 266 42.1
Sabra03G0119900 Salix brachista HOM05D003399 ORTHO05D003393 4.7e-32 142.5 299 40.8
Duzib052G0315 Durio zibethinus HOM05D003399 ORTHO05D003393 7.9e-32 141.7 283 41.3
Gohir.A03G151600 Gossypium hirsutum HOM05D003399 ORTHO05D003393 7.9e-32 141.7 291 47.4
Gohir.D12G144800 Gossypium hirsutum HOM05D003399 ORTHO05D003393 7.9e-32 141.7 282 39.4
CiPaw.06G108000 Carya illinoinensis HOM05D003399 ORTHO05D003393 8.8e-31 138.3 287 40.4
Potri.003G164800 Populus trichocarpa HOM05D003399 ORTHO05D003393 3.3e-30 136.3 303 38.0
Haze_12480 Corylus avellana HOM05D003399 ORTHO05D003393 7.4e-30 135.2 267 40.8
Eucgr.G01956 Eucalyptus grandis HOM05D003399 ORTHO05D003393 7.4e-30 135.2 298 36.2
Gohir.A12G140200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 7.4e-30 135.2 283 39.2
Gohir.D02G174700 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.3e-29 134.4 287 46.3
Gorai.005G196300 Gossypium raimondii HOM05D003399 ORTHO05D003393 1.7e-29 134.0 290 45.9
TAR622G1322 Trochodendron aralioides HOM05D003399 ORTHO05D003393 6.3e-29 132.1 277 40.4
Gohir.A04G101200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.1e-28 131.3 282 36.5
Oeu019432.1 Olea europaea HOM05D003399 ORTHO05D003393 1.1e-28 131.3 265 39.6
Gohir.D04G140300 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.8e-28 130.6 282 35.5
Gorai.012G125300 Gossypium raimondii HOM05D003399 ORTHO05D003393 4.1e-28 129.4 283 36.0
Gorai.008G156200 Gossypium raimondii HOM05D003399 ORTHO05D003393 7.0e-28 128.6 282 39.0
TAR374G0208 Trochodendron aralioides HOM05D003399 ORTHO05D003393 1.9e-25 120.6 278 38.5
GSVIVG01000970001 Vitis vinifera HOM05D003399 ORTHO05D003393 2.5e-25 120.2 285 35.8
RcHm_v2.0_Chr4g0429231 Rosa chinensis HOM05D003399 ORTHO05D003393 3.2e-25 119.8 340 37.6
CSS0040305 Camellia sinensis var. sinensis HOM05D003399 ORTHO05D006018 4.2e-25 119.4 275 37.5
Aqoxy3G01823 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 1.0e-23 114.8 286 33.6
MD13G1127900 Malus domestica HOM05D003399 ORTHO05D003393 1.8e-23 114.0 313 31.9
Ciclev10033818m.g Citrus clementina HOM05D003399 ORTHO05D003393 3.0e-23 113.2 327 40.4
MSTRG.465 Avicennia marina HOM05D003399 ORTHO05D003393 5.2e-23 112.5 279 35.5
Oeu044505.1 Olea europaea HOM05D003399 ORTHO05D003393 2.0e-22 110.5 265 36.6
Dinv12132 Davidia involucrata HOM05D003399 ORTHO05D003393 4.4e-22 109.4 308 34.7
Peaxi162Scf00234g01011 Petunia axillaris HOM05D003399 ORTHO05D003393 4.4e-22 109.4 273 35.5
Actinidia22126 Actinidia chinensis HOM05D003399 ORTHO05D003393 4.8e-21 105.9 268 34.0
Nitab4.5_0014700g0010 Nicotiana tabacum HOM05D003399 ORTHO05D003393 2.4e-20 103.6 285 34.4
TWI36G0503 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 2.4e-20 103.6 293 39.6
TWI18G1150 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 1.6e-19 100.9 190 47.4
MD16G1128300 Malus domestica HOM05D003399 ORTHO05D003393 2.0e-19 100.5 321 32.4
Oeu055475.1 Olea europaea HOM05D003399 ORTHO05D003393 2.7e-19 100.1 276 33.7
TAR629G1336 Trochodendron aralioides HOM05D003399 ORTHO05D003393 3.5e-19 99.8 273 32.2
FAN17G2315 Fragaria x ananassa HOM05D003399 ORTHO05D003393 5.9e-19 99.0 340 30.9
Oeu003275.1 Olea europaea HOM05D003399 ORTHO05D003393 7.7e-19 98.6 274 33.6
FvH4_4g22950 Fragaria vesca HOM05D003399 ORTHO05D003393 1.3e-18 97.8 341 31.1
Actinidia30598 Actinidia chinensis HOM05D003399 ORTHO05D003393 6.5e-18 95.5 207 35.7
Eucgr.B03547 Eucalyptus grandis HOM05D003399 ORTHO05D003393 1.1e-17 94.7 234 34.2
FAN12G0769 Fragaria x ananassa HOM05D003399 ORTHO05D003393 1.1e-17 94.7 343 30.6
Nitab4.5_0009065g0010 Nicotiana tabacum HOM05D003399 ORTHO05D003393 1.5e-17 94.4 276 37.0
TWI75G1177 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 1.9e-17 94.0 187 38.0
Atru.chr11.2413 Acer truncatum HOM05D003399 ORTHO05D003393 5.5e-17 92.4 79 60.8
Prupe.1G218100 Prunus persica HOM05D003399 ORTHO05D003393 7.2e-17 92.0 330 31.2
FAN07G1125 Fragaria x ananassa HOM05D003399 ORTHO05D003393 6.1e-16 89.0 348 32.2
Rhsim12G0018700 Rhododendron simsii HOM05D003399 ORTHO05D003393 8.0e-16 88.6 260 33.1
Peaxi162Scf00128g01764 Petunia axillaris HOM05D003399 ORTHO05D003393 6.8e-15 85.5 286 31.5
PGR119G0713 Punica granatum HOM05D003399 ORTHO05D003393 3.4e-14 83.2 308 28.6
MBI07_g40352_MAGBIO Magnolia biondii HOM05D003399 ORTHO05D003393 5.7e-14 82.4 287 28.6
MELO3C017803.2 Cucumis melo HOM05D003399 ORTHO05D003393 7.5e-14 82.0 230 33.0
Sopen01g005220 Solanum pennellii HOM05D003399 ORTHO05D003393 3.7e-13 79.7 298 28.9
Solyc01g009720.2 Solanum lycopersicum HOM05D003399 ORTHO05D003393 1.1e-12 78.2 297 29.6
AL6G23870 Arabidopsis lyrata HOM05D003399 ORTHO05D003393 1.8e-12 77.4 70 61.4
PGSC0003DMG400030004 Solanum tuberosum HOM05D003399 ORTHO05D003393 1.8e-12 77.4 247 40.5
Lj6P836T14 Lonicera japonica HOM05D003399 ORTHO05D003393 4.1e-12 76.3 260 31.5
VMungo1383G2170 Vigna mungo HOM05D003399 ORTHO05D003393 4.1e-12 76.3 316 29.1
Nn3g16314 Nelumbo nucifera HOM05D003399 ORTHO05D003393 5.4e-12 75.9 251 31.5
Sed0004087 Sechium edule HOM05D003399 ORTHO05D003393 7.0e-12 75.5 218 32.6
Sp6g30740 Schrenkiella parvula HOM05D003399 ORTHO05D003393 9.1e-12 75.1 73 58.9
Migut.K01039 Erythranthe guttata HOM05D003399 ORTHO05D003393 1.2e-11 74.7 191 37.2
Thhalv10015692m.g Eutrema salsugineum HOM05D003399 ORTHO05D003393 1.2e-11 74.7 73 58.9
Aqoxy5G03202 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 3.5e-11 73.2 177 37.3
BcaNung01873 Brassica carinata HOM05D003399 ORTHO05D003393 3.5e-11 73.2 181 33.1
Carub.0006s1142 Capsella rubella HOM05D003399 ORTHO05D003393 3.5e-11 73.2 72 56.9
SalBow7G1980 Salvia bowleyana HOM05D003399 ORTHO05D003393 3.5e-11 73.2 77 50.6
A03p05900 Brassica napus HOM05D003399 ORTHO05D003393 4.5e-11 72.8 65 58.5
BraA03t09928Z Brassica rapa HOM05D003399 ORTHO05D003393 4.5e-11 72.8 65 58.5
CAN.G1811.1 Capsicum annuum HOM05D003399 ORTHO05D003393 5.9e-11 72.4 282 36.5
CARHR200200 Cardamine hirsuta HOM05D003399 ORTHO05D003393 5.9e-11 72.4 179 33.5
AT5G13250 Arabidopsis thaliana HOM05D003399 ORTHO05D003393 7.7e-11 72.0 177 33.3
ClCG07G011810 Citrullus lanatus HOM05D003399 ORTHO05D003393 1.0e-10 71.6 240 30.0
PSO017G1762 Papaver somniferum HOM05D003399 ORTHO05D003393 1.0e-10 71.6 216 29.2
BcaB01g05366 Brassica carinata HOM05D003399 ORTHO05D003393 1.7e-10 70.9 65 58.5
C03p06820 Brassica napus HOM05D003399 ORTHO05D003393 1.7e-10 70.9 65 58.5
BolC3t13193H Brassica oleracea HOM05D003399 ORTHO05D003393 1.7e-10 70.9 65 58.5
MELO3C022349.2 Cucumis melo HOM05D003399 ORTHO05D003393 1.7e-10 70.9 193 32.6
Cc11_g17500 Coffea canephora HOM05D003399 ORTHO05D003393 2.2e-10 70.5 84 47.6
BcaC04g19132 Brassica carinata HOM05D003399 ORTHO05D003393 2.9e-10 70.1 202 33.2
A02p01800 Brassica napus HOM05D003399 ORTHO05D003393 2.9e-10 70.1 182 32.4
BolC9t59223H Brassica oleracea HOM05D003399 ORTHO05D003393 2.9e-10 70.1 202 33.2
BraA02t05155Z Brassica rapa HOM05D003399 ORTHO05D003393 2.9e-10 70.1 182 32.4
CANSAT01G0203 Cannabis sativa HOM05D003399 ORTHO05D003393 3.8e-10 69.7 99 41.4
A10p24960 Brassica napus HOM05D003399 ORTHO05D003393 5.0e-10 69.3 199 33.7
C09p63830 Brassica napus HOM05D003399 ORTHO05D003393 5.0e-10 69.3 202 33.2
BraA10t44558Z Brassica rapa HOM05D003399 ORTHO05D003393 5.0e-10 69.3 199 33.7
THA.LOC104807363 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 5.0e-10 69.3 238 34.0
C02p06020 Brassica napus HOM05D003399 ORTHO05D003393 6.5e-10 68.9 185 31.9
ClCG06G001790 Citrullus lanatus HOM05D003399 ORTHO05D003393 1.1e-09 68.2 208 33.7
THA.LOC104825469 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 1.1e-09 68.2 269 30.1
BolC2t06544H Brassica oleracea HOM05D003399 ORTHO05D003393 1.5e-09 67.8 190 31.1
CsaV3_6G007830 Cucumis sativus L. HOM05D003399 ORTHO05D003393 1.5e-09 67.8 195 33.8
Psat3g189760 Pisum sativum HOM05D003399 ORTHO05D003393 3.2e-09 66.6 193 34.2
THA.LOC104820532 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 3.2e-09 66.6 239 27.2
PSO478G0221 Papaver somniferum HOM05D003399 ORTHO05D003393 4.2e-09 66.2 266 25.9
Lsat_1_v5_gn_4_1321 Lactuca sativa HOM05D003399 ORTHO05D003393 5.5e-09 65.9 259 29.0
Nn4g22186 Nelumbo nucifera HOM05D003399 ORTHO05D003393 5.5e-09 65.9 77 42.9
Medtr7g021270 Medicago truncatula HOM05D003399 ORTHO05D003393 7.2e-09 65.5 205 34.1
Lj1g0015103 Lotus japonicus HOM05D003399 ORTHO05D003393 1.6e-08 64.3 74 48.6
Aa31LG3G14410 Aethionema arabicum HOM05D003399 ORTHO05D003393 6.1e-08 62.4 70 50.0
Nn3g16435 Nelumbo nucifera HOM05D003399 ORTHO05D003393 8.0e-08 62.0 142 34.5
arahy.Tifrunner.gnm1.ann1.FX1Z4A Arachis hypogaea HOM05D003399 ORTHO05D003393 1.0e-07 61.6 65 55.4
arahy.Tifrunner.gnm1.ann1.ULYV8E Arachis hypogaea HOM05D003399 ORTHO05D003393 1.0e-07 61.6 65 55.4
CsaV3_4G002390 Cucumis sativus L. HOM05D003399 ORTHO05D003393 1.0e-07 61.6 234 30.8
PSO478G0797 Papaver somniferum HOM05D003399 ORTHO05D003393 1.0e-07 61.6 327 27.2
Nn6g35633 Nelumbo nucifera HOM05D003399 ORTHO05D003393 1.8e-07 60.8 78 42.3
DCAR_024622 Daucus carota HOM05D003399 ORTHO05D003393 2.3e-07 60.5 66 51.5
CARHR027530 Cardamine hirsuta HOM05D003399 ORTHO05D003393 3.0e-07 60.1 32 71.9
PSO017G5218 Papaver somniferum HOM05D003399 ORTHO05D003393 3.0e-07 60.1 327 26.3
Sed0023362 Sechium edule HOM05D003399 ORTHO05D003393 3.0e-07 60.1 218 30.3
AL1G41590 Arabidopsis lyrata HOM05D003399 ORTHO05D003393 4.0e-07 59.7 31 74.2
AT1G28080 Arabidopsis thaliana HOM05D003399 ORTHO05D003393 4.0e-07 59.7 31 74.2
BcaC05g26625 Brassica carinata HOM05D003399 ORTHO05D003393 4.0e-07 59.7 31 74.2
C05p26750 Brassica napus HOM05D003399 ORTHO05D003393 4.0e-07 59.7 31 74.2
BolC5t31399H Brassica oleracea HOM05D003399 ORTHO05D003393 4.0e-07 59.7 31 74.2
Carub.0001s2651 Capsella rubella HOM05D003399 ORTHO05D003393 4.0e-07 59.7 31 74.2
Thhalv10009825m.g Eutrema salsugineum HOM05D003399 ORTHO05D003393 4.0e-07 59.7 31 74.2
BcaC06g35330 Brassica carinata HOM05D003399 ORTHO05D003393 5.2e-07 59.3 32 71.9
Lalb_Chr10g0092161 Lupinus albus HOM05D003399 ORTHO05D003393 5.2e-07 59.3 71 46.5
C07p17320 Brassica napus HOM05D003399 ORTHO05D003393 6.8e-07 58.9 31 71.0
BolC7t42236H Brassica oleracea HOM05D003399 ORTHO05D003393 6.8e-07 58.9 31 71.0
Glyma.18G282500 Glycine max HOM05D003399 ORTHO05D003393 8.8e-07 58.5 113 36.3
TPR.G2909 Trifolium pratense HOM05D003399 ORTHO05D003393 8.8e-07 58.5 209 38.8
BcaB03g13959 Brassica carinata HOM05D003399 ORTHO05D003393 1.2e-06 58.2 32 71.9
A08p25920 Brassica napus HOM05D003399 ORTHO05D003393 1.2e-06 58.2 216 26.4
A09p38010 Brassica napus HOM05D003399 ORTHO05D003393 1.5e-06 57.8 31 71.0
BraA09t39311Z Brassica rapa HOM05D003399 ORTHO05D003393 1.5e-06 57.8 31 71.0
Phvul.008G018800 Phaseolus vulgaris HOM05D003399 ORTHO05D003393 1.5e-06 57.8 109 35.8
BolC3t19722H Brassica oleracea HOM05D003399 ORTHO05D003393 4.4e-06 56.2 246 25.6
BcaC01g00006 Brassica carinata HOM05D003399 ORTHO05D003393 7.5e-06 55.5 247 25.5
CDE02G1781 Ceratophyllum demersum HOM05D003399 ORTHO05D003393 7.5e-06 55.5 211 27.0
SGA_v2.0_scaffold258G45789 Striga asiatica HOM05D003399 ORTHO05D003393 7.5e-06 55.5 172 31.4
C03p74730 Brassica napus HOM05D003399 ORTHO05D003393 9.8e-06 55.1 246 25.2


User provided reference genes

Program Settings