Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 3.3e-53 211.5 107 100.0
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 3.3e-13 78.6 102 44.1
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 7.4e-13 77.4 96 44.8
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 9.6e-13 77.0 96 44.8
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 1.6e-12 76.3 97 44.3
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 6.2e-12 74.3 73 52.1
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 8.2e-12 73.9 109 45.9
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 1.1e-11 73.6 80 46.2
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 1.1e-11 73.6 99 42.4
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 1.1e-11 73.6 103 41.7
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 1.4e-11 73.2 99 44.4
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 1.8e-11 72.8 98 42.9
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 2.4e-11 72.4 100 43.0
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 3.1e-11 72.0 91 42.9
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.0e-11 71.6 100 42.0
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 4.0e-11 71.6 100 42.0
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 5.3e-11 71.2 91 42.9
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 9.0e-11 70.5 99 44.4
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.0e-11 70.5 100 41.0
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 9.0e-11 70.5 95 41.1
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 9.0e-11 70.5 96 42.7
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 9.0e-11 70.5 75 50.7
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 9.0e-11 70.5 81 45.7
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-10 70.1 67 50.7
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 1.2e-10 70.1 76 50.0
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 1.5e-10 69.7 101 40.6
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 1.5e-10 69.7 101 40.6
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 1.5e-10 69.7 114 39.5
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.5e-10 69.7 96 42.7
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 1.5e-10 69.7 96 45.8
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 2.0e-10 69.3 68 51.5
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 2.0e-10 69.3 98 41.8
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 2.0e-10 69.3 64 46.9
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 2.0e-10 69.3 100 41.0
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.6e-10 68.9 98 41.8
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 3.4e-10 68.6 100 39.0
QL12p026142 Quercus lobata HOM05D003277 ORTHO05D003275 3.4e-10 68.6 95 43.2
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 4.5e-10 68.2 92 39.1
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 7.6e-10 67.4 70 45.7
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 7.6e-10 67.4 75 45.3
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.6e-10 67.4 81 48.1
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 7.6e-10 67.4 81 48.1
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 7.6e-10 67.4 67 47.8
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 1.0e-09 67.0 76 48.7
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 1.0e-09 67.0 76 48.7
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 2.2e-09 65.9 78 44.9
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.2e-09 65.9 78 44.9
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.2e-09 65.9 78 44.9
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.2e-09 65.9 115 40.0
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.2e-09 65.9 76 42.1
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 2.9e-09 65.5 69 47.8
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 2.9e-09 65.5 68 47.1
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 3.8e-09 65.1 61 52.5
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 3.8e-09 65.1 108 37.0
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 3.8e-09 65.1 65 46.2
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.8e-09 65.1 78 44.9
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 3.8e-09 65.1 71 47.9
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 3.8e-09 65.1 107 37.4
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 4.9e-09 64.7 91 41.8
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 4.9e-09 64.7 71 43.7
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 4.9e-09 64.7 106 41.5
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 6.5e-09 64.3 85 44.7
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 8.4e-09 63.9 72 43.1
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 8.4e-09 63.9 42 66.7
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 1.1e-08 63.5 106 37.7
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.1e-08 63.5 111 40.5
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 1.1e-08 63.5 91 40.7
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.4e-08 63.2 65 49.2
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.9e-08 62.8 67 49.3
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 1.9e-08 62.8 93 39.8
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 1.9e-08 62.8 100 43.0
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 1.9e-08 62.8 77 41.6
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.2e-08 62.0 67 49.3
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 3.2e-08 62.0 104 40.4
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 3.2e-08 62.0 106 40.6
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 3.2e-08 62.0 106 40.6
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 3.2e-08 62.0 64 50.0
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 4.2e-08 61.6 66 47.0
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 4.2e-08 61.6 76 46.1
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.2e-08 61.6 62 50.0
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 4.2e-08 61.6 93 43.0
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 5.5e-08 61.2 65 49.2
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 5.5e-08 61.2 93 40.9
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 5.5e-08 61.2 74 45.9
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 5.5e-08 61.2 69 46.4
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 5.5e-08 61.2 106 39.6
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 5.5e-08 61.2 61 50.8
THA.LOC104803771 Tarenaya hassleriana HOM05D012534 ORTHO05D003275 5.5e-08 61.2 95 38.9
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 7.1e-08 60.8 67 47.8
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 7.1e-08 60.8 69 50.7
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 7.1e-08 60.8 69 50.7
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 7.1e-08 60.8 73 45.2
SGA_v2.0_scaffold27G11531 Striga asiatica HOM05D003277 ORTHO05D003275 7.1e-08 60.8 93 40.9
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 7.1e-08 60.8 84 44.0
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 9.3e-08 60.5 91 39.6
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 9.3e-08 60.5 65 46.2
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 9.3e-08 60.5 62 50.0
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 9.3e-08 60.5 104 38.5
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 9.3e-08 60.5 69 46.4
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.2e-07 60.1 67 50.7
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 1.2e-07 60.1 106 38.7
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.2e-07 60.1 62 50.0
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.2e-07 60.1 99 40.4
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.2e-07 60.1 69 43.5
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.6e-07 59.7 77 45.5
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 1.6e-07 59.7 72 43.1
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.6e-07 59.7 75 46.7
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 1.6e-07 59.7 64 51.6
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 2.1e-07 59.3 99 39.4
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 2.1e-07 59.3 115 36.5
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 2.7e-07 58.9 93 38.7
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 2.7e-07 58.9 69 44.9
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 2.7e-07 58.9 101 39.6
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 3.5e-07 58.5 65 47.7
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 3.5e-07 58.5 62 53.2
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 4.6e-07 58.2 77 45.5
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.6e-07 58.2 99 41.4
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 4.6e-07 58.2 69 44.9
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 4.6e-07 58.2 74 40.5
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 4.6e-07 58.2 61 52.5
Zm00001eb337590 Zea mays HOM05D003277 ORTHO05D003275 4.6e-07 58.2 82 42.7
AL4G17390 Arabidopsis lyrata HOM05D012534 ORTHO05D003275 6.0e-07 57.8 84 41.7
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 6.0e-07 57.8 74 40.5
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 6.0e-07 57.8 69 49.3
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 7.9e-07 57.4 75 45.3
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.9e-07 57.4 74 40.5
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 7.9e-07 57.4 77 49.4
ATR1120G074 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.0e-06 57.0 39 71.8
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.0e-06 57.0 76 42.1
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.0e-06 57.0 68 44.1
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 1.0e-06 57.0 76 47.4
Rhsim12G0198400 Rhododendron simsii HOM05D000062 ORTHO05D014675 1.0e-06 57.0 62 45.2
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 1.0e-06 57.0 101 40.6
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 1.3e-06 56.6 66 45.5
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 1.3e-06 56.6 71 40.8
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.3e-06 56.6 68 44.1
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 1.3e-06 56.6 67 44.8
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 1.8e-06 56.2 104 37.5
Peaxi162Scf00546g00117 Petunia axillaris HOM05D003277 ORTHO05D003275 1.8e-06 56.2 72 37.5
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 1.8e-06 56.2 98 40.8
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.8e-06 56.2 69 46.4
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.8e-06 56.2 103 34.0
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.8e-06 56.2 69 47.8
Thhalv10000375m.g Eutrema salsugineum HOM05D012534 ORTHO05D003275 2.3e-06 55.8 84 38.1
Peaxi162Scf00560g00019 Petunia axillaris HOM05D003277 ORTHO05D003275 2.3e-06 55.8 74 39.2
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.3e-06 55.8 64 46.9
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 2.3e-06 55.8 62 53.2
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 3.0e-06 55.5 67 46.3
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 3.0e-06 55.5 71 46.5
Eucgr.C02884 Eucalyptus grandis HOM05D003277 ORTHO05D003275 3.0e-06 55.5 100 38.0
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 3.0e-06 55.5 74 45.9
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 3.0e-06 55.5 75 46.7
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 3.0e-06 55.5 67 47.8
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 3.9e-06 55.1 70 48.6
CARHR115510 Cardamine hirsuta HOM05D012534 ORTHO05D003275 3.9e-06 55.1 79 39.2
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 3.9e-06 55.1 104 33.7
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.9e-06 55.1 104 33.7
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.9e-06 55.1 100 36.0
Migut.A00248 Erythranthe guttata HOM05D003277 ORTHO05D003275 5.1e-06 54.7 88 37.5
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 5.1e-06 54.7 104 32.7
HanXRQChr10g0313381 Helianthus annuus HOM05D003277 ORTHO05D003275 5.1e-06 54.7 63 46.0
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 5.1e-06 54.7 68 44.1
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 5.1e-06 54.7 101 32.7
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 5.1e-06 54.7 68 42.6
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 6.7e-06 54.3 68 44.1
Psat6g033640 Pisum sativum HOM05D003277 ORTHO05D003275 6.7e-06 54.3 89 37.1
Sopen12g003040 Solanum pennellii HOM05D003277 ORTHO05D003275 6.7e-06 54.3 66 39.4
Lsat_1_v5_gn_6_11260 Lactuca sativa HOM05D003277 ORTHO05D003275 8.7e-06 53.9 96 40.6
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 8.7e-06 53.9 101 34.7
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 8.7e-06 53.9 101 33.7
HPP92_008676 Vanilla planifolia HOM05D003277 ORTHO05D003275 8.7e-06 53.9 66 50.0


User provided reference genes

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