Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 1.5e-181 639.4 328 100.0
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 8.9e-102 374.4 316 63.0
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 3.5e-98 362.5 315 61.3
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 3.5e-98 362.5 323 61.6
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 3.0e-97 359.4 318 61.3
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 6.6e-97 358.2 315 61.0
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 3.6e-95 352.4 323 59.1
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 5.3e-94 348.6 340 55.3
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 2.4e-91 339.7 323 57.3
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 7.1e-91 338.2 328 57.0
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 4.6e-90 335.5 316 58.5
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 1.3e-89 334.0 323 56.7
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.7e-89 333.6 318 57.2
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 8.7e-89 331.3 323 56.7
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 2.5e-88 329.7 315 58.1
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 4.8e-87 325.5 314 57.6
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 2.4e-86 323.2 325 56.0
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 3.5e-82 309.3 322 54.0
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 4.6e-82 308.9 327 55.7
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 1.9e-80 303.5 323 55.1
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 3.3e-80 302.8 329 52.6
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 2.1e-79 300.1 315 54.0
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 4.8e-79 298.9 316 53.2
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 1.1e-78 297.7 324 55.2
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 5.8e-77 292.0 315 52.1
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 7.9e-74 281.6 314 49.7
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 1.1e-72 277.7 315 49.8
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 5.7e-72 275.4 322 48.4
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 7.4e-72 275.0 313 51.4
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 4.8e-71 272.3 323 48.9
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 8.2e-71 271.6 320 48.1
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 1.4e-70 270.8 313 48.2
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 1.8e-70 270.4 316 47.2
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 3.1e-70 269.6 316 50.0
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 1.5e-69 267.3 322 48.1
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 2.2e-68 263.5 322 47.2
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 6.5e-68 261.9 327 48.3
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 6.5e-68 261.9 313 49.5
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 8.5e-68 261.5 319 48.6
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 1.4e-67 260.8 327 48.3
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 2.5e-67 260.0 322 47.5
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 4.2e-67 259.2 320 47.8
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.3e-65 254.2 313 47.0
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 1.9e-64 250.4 315 45.4
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 9.7e-64 248.1 317 47.9
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 1.6e-63 247.3 316 46.2
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 8.2e-63 245.0 317 47.3
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 1.4e-62 244.2 315 44.4
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.9e-62 241.9 314 43.3
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 6.9e-62 241.9 318 45.0
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 9.1e-62 241.5 319 47.0
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 1.2e-61 241.1 315 44.4
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 1.2e-61 241.1 317 44.5
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.5e-61 240.7 318 46.9
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 2.6e-61 240.0 315 43.5
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.0e-60 238.0 317 44.2
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 2.9e-60 236.5 315 43.5
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 1.1e-59 234.6 321 45.2
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 1.9e-59 233.8 317 45.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 5.5e-59 232.3 323 44.6
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 3.0e-57 226.5 315 43.2
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 3.3e-56 223.0 343 41.4
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 3.3e-56 223.0 355 42.3
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 4.4e-56 222.6 329 42.6
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 7.4e-56 221.9 315 42.9
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 2.8e-55 219.9 318 43.7
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 4.8e-55 219.2 314 41.7
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 6.3e-55 218.8 319 42.9
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 8.2e-55 218.4 324 41.0
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 8.2e-55 218.4 335 41.5
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 4.1e-54 216.1 336 42.3
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 5.3e-54 215.7 321 44.2
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 5.3e-54 215.7 319 43.6
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 2.6e-53 213.4 323 41.8
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 2.6e-53 213.4 335 41.5
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 3.4e-53 213.0 322 42.9
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 1.1e-51 208.0 315 41.0
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 2.7e-50 203.4 320 38.4
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 2.3e-49 200.3 332 40.1
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 3.9e-49 199.5 322 40.7
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 9.1e-46 188.3 315 37.5
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 1.2e-45 188.0 335 38.8
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 1.5e-43 181.0 312 36.5
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 3.1e-30 136.7 316 33.5
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 5.7e-16 89.4 81 56.8
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 2.4e-14 84.0 111 43.2
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 9.2e-14 82.0 149 38.3
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 2.0e-13 80.9 112 38.4
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 2.7e-13 80.5 58 69.0
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 1.9e-11 74.3 58 65.5
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 4.0e-09 66.6 378 26.5
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 7.0e-06 55.8 108 34.3


User provided reference genes

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