Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc201.12 Carica papaya HOM05D003118 ORTHO05D003618 3.9e-93 344.7 168 100.0
Thecc.03G287000 Theobroma cacao HOM05D003118 ORTHO05D003618 9.1e-26 120.9 150 46.0
Duzib205G0707 Durio zibethinus HOM05D003118 ORTHO05D003618 5.9e-25 118.2 130 49.2
Actinidia28342 Actinidia chinensis HOM05D003118 ORTHO05D003618 2.9e-24 115.9 130 47.7
QL02p033293 Quercus lobata HOM05D003118 ORTHO05D003618 8.5e-24 114.4 130 46.9
MD06G1091800 Malus domestica HOM05D003118 ORTHO05D003618 1.1e-23 114.0 134 47.8
Manes.02G016600 Manihot esculenta HOM05D003118 ORTHO05D003618 1.1e-23 114.0 130 49.2
CiPaw.11G129400 Carya illinoinensis HOM05D003118 ORTHO05D003618 1.9e-23 113.2 130 48.5
Sabra03G0095300 Salix brachista HOM05D003118 ORTHO05D003618 3.2e-23 112.5 130 48.5
Dinv37591 Davidia involucrata HOM05D003118 ORTHO05D003618 4.2e-23 112.1 130 45.4
TWI81G0015 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 5.5e-23 111.7 130 50.8
MD14G1112600 Malus domestica HOM05D003118 ORTHO05D003618 9.4e-23 110.9 134 47.0
SHI07074 Sapria himalayana HOM05D003118 ORTHO05D003618 1.6e-22 110.2 130 45.4
Potri.003G133000 Populus trichocarpa HOM05D003118 ORTHO05D003618 3.6e-22 109.0 130 47.7
Prupe.5G107000 Prunus persica HOM05D003118 ORTHO05D003618 4.7e-22 108.6 134 47.8
COL.COLO4_08355 Corchorus olitorius HOM05D003118 ORTHO05D003618 8.0e-22 107.8 133 47.4
Dinv38896 Davidia involucrata HOM05D003118 ORTHO05D003618 8.0e-22 107.8 137 43.8
TWI14G1154 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 8.0e-22 107.8 130 48.5
CSS0022485 Camellia sinensis var. sinensis HOM05D003118 ORTHO05D003618 1.8e-21 106.7 130 43.8
Gohir.D08G134400 Gossypium hirsutum HOM05D003118 ORTHO05D003618 2.3e-21 106.3 130 46.2
Gorai.004G137500 Gossypium raimondii HOM05D003118 ORTHO05D003618 2.3e-21 106.3 130 46.2
Cfa012251 Carpinus fangiana HOM05D003118 ORTHO05D003618 3.0e-21 105.9 130 43.8
Gohir.A08G114000 Gossypium hirsutum HOM05D003118 ORTHO05D003618 5.2e-21 105.1 142 45.8
TAR375G0293 Trochodendron aralioides HOM05D003118 ORTHO05D003618 6.8e-21 104.8 138 42.8
FvH4_5g03250 Fragaria vesca HOM05D003118 ORTHO05D003618 8.8e-21 104.4 145 40.0
Lalb_Chr09g0320801 Lupinus albus HOM05D003118 ORTHO05D003618 1.2e-20 104.0 149 39.6
FAN04G2035 Fragaria x ananassa HOM05D003118 ORTHO05D003618 2.6e-20 102.8 130 43.1
FAN04G2118 Fragaria x ananassa HOM05D003118 ORTHO05D003618 2.6e-20 102.8 130 43.1
FAN13G0863 Fragaria x ananassa HOM05D003118 ORTHO05D003618 2.6e-20 102.8 130 43.1
PGR042G1679 Punica granatum HOM05D003118 ORTHO05D003618 2.6e-20 102.8 148 41.9
GSVIVG01019423001 Vitis vinifera HOM05D003118 ORTHO05D003618 2.6e-20 102.8 130 44.6
RcHm_v2.0_Chr7g0196521 Rosa chinensis HOM05D003118 ORTHO05D003618 3.4e-20 102.4 134 43.3
Sp7g00460 Schrenkiella parvula HOM05D003118 ORTHO05D003618 4.4e-20 102.1 135 42.2
A04p14690 Brassica napus HOM05D003118 ORTHO05D003618 5.7e-20 101.7 147 38.1
FAN08G3653 Fragaria x ananassa HOM05D003118 ORTHO05D003618 5.7e-20 101.7 130 43.1
Rhsim02G0236100 Rhododendron simsii HOM05D003118 ORTHO05D003618 7.5e-20 101.3 130 43.8
Haze_08750 Corylus avellana HOM05D003118 ORTHO05D003618 9.8e-20 100.9 126 43.7
GSVIVG01026973001 Vitis vinifera HOM05D003118 ORTHO05D003618 9.8e-20 100.9 150 36.7
Cc08_g15310 Coffea canephora HOM05D003118 ORTHO05D003618 1.3e-19 100.5 130 43.1
CiPaw.01G067900 Carya illinoinensis HOM05D003118 ORTHO05D003618 2.8e-19 99.4 137 41.6
BcaC02g08950 Brassica carinata HOM05D003118 ORTHO05D003618 4.9e-19 98.6 147 38.1
C04p48560 Brassica napus HOM05D003118 ORTHO05D003618 4.9e-19 98.6 147 38.1
BolC4t26449H Brassica oleracea HOM05D003118 ORTHO05D003618 4.9e-19 98.6 147 38.1
BraA04t17109Z Brassica rapa HOM05D003118 ORTHO05D003618 4.9e-19 98.6 147 38.1
Glyma.11G020900 Glycine max HOM05D003118 ORTHO05D003618 4.9e-19 98.6 154 36.4
Thhalv10027658m.g Eutrema salsugineum HOM05D003118 ORTHO05D003618 6.3e-19 98.2 135 40.0
TAR629G1012 Trochodendron aralioides HOM05D003118 ORTHO05D003618 6.3e-19 98.2 130 42.3
BcaB02g07884 Brassica carinata HOM05D003118 ORTHO05D003618 8.3e-19 97.8 135 40.0
CANSAT21G1093 Cannabis sativa HOM05D003118 ORTHO05D003618 8.3e-19 97.8 126 43.7
AT5G41580 Arabidopsis thaliana HOM05D003118 ORTHO05D003618 1.4e-18 97.1 147 38.1
Cfa003868 Carpinus fangiana HOM05D003118 ORTHO05D003618 5.4e-18 95.1 150 36.0
Glyma.01G222500 Glycine max HOM05D003118 ORTHO05D003618 5.4e-18 95.1 154 36.4
Hma1.2p1_0216F.1_g091120 Hydrangea macrophylla HOM05D003118 ORTHO05D003618 5.4e-18 95.1 151 39.7
VMungo1215G2430 Vigna mungo HOM05D003118 ORTHO05D003618 5.4e-18 95.1 133 39.8
Atru.chr9.2107 Acer truncatum HOM05D003118 ORTHO05D003618 7.0e-18 94.7 134 39.6
AL7G47820 Arabidopsis lyrata HOM05D003118 ORTHO05D003618 7.0e-18 94.7 126 40.5
BcaB06g27629 Brassica carinata HOM05D003118 ORTHO05D003618 1.2e-17 94.0 125 40.8
BcaC08g44538 Brassica carinata HOM05D003118 ORTHO05D003618 1.2e-17 94.0 126 38.9
C06p20020 Brassica napus HOM05D003118 ORTHO05D003618 1.2e-17 94.0 126 38.9
GSVIVG01026971001 Vitis vinifera HOM05D003118 ORTHO05D003618 1.2e-17 94.0 119 41.2
LjContig00312_ERROPOS870357g0013212 Lotus japonicus HOM05D003118 ORTHO05D003618 1.6e-17 93.6 134 40.3
A07p20860 Brassica napus HOM05D003118 ORTHO05D003618 2.7e-17 92.8 126 38.9
BraA07t29773Z Brassica rapa HOM05D003118 ORTHO05D003618 2.7e-17 92.8 126 38.9
Migut.E01210 Erythranthe guttata HOM05D003118 ORTHO05D003618 3.5e-17 92.4 139 38.1
MSTRG.13862 Avicennia marina HOM05D003118 ORTHO05D003618 5.9e-17 91.7 130 40.0
Sopen08g003990 Solanum pennellii HOM05D003118 ORTHO05D003618 5.9e-17 91.7 134 39.6
DCAR_004609 Daucus carota HOM05D003118 ORTHO05D003618 7.7e-17 91.3 130 41.5
FAN18G3666 Fragaria x ananassa HOM05D003118 ORTHO05D003618 7.7e-17 91.3 118 43.2
Hund14263 Selenicereus undatus HOM05D003118 ORTHO05D003618 7.7e-17 91.3 171 36.3
Hund11431 Selenicereus undatus HOM05D003118 ORTHO05D003618 1.0e-16 90.9 154 35.7
Psat2g183920 Pisum sativum HOM05D003118 ORTHO05D003618 1.3e-16 90.5 134 41.0
Carub.0007s3389 Capsella rubella HOM05D003118 ORTHO05D003618 1.7e-16 90.1 126 38.9
Peaxi162Scf00102g01644 Petunia axillaris HOM05D003118 ORTHO05D003618 1.7e-16 90.1 134 38.1
Ca_24533_v3 Cicer arietinum L. HOM05D003118 ORTHO05D003618 2.3e-16 89.7 134 41.0
Nitab4.5_0002231g0040 Nicotiana tabacum HOM05D003118 ORTHO05D003618 2.3e-16 89.7 134 38.8
Phvul.002G160400 Phaseolus vulgaris HOM05D003118 ORTHO05D003618 2.3e-16 89.7 157 35.0
Solyc08g008130.4 Solanum lycopersicum HOM05D003118 ORTHO05D003618 2.9e-16 89.4 134 39.6
TPR.G6616 Trifolium pratense HOM05D003118 ORTHO05D003618 2.9e-16 89.4 134 40.3
SGA_v2.0_scaffold173G39132 Striga asiatica HOM05D003118 ORTHO05D003618 3.8e-16 89.0 130 38.5
Nitab4.5_0005339g0020 Nicotiana tabacum HOM05D003118 ORTHO05D003618 5.0e-16 88.6 134 38.1
Eucgr.E00782 Eucalyptus grandis HOM05D003118 ORTHO05D003618 6.6e-16 88.2 126 40.5
Oeu042365.1 Olea europaea HOM05D003118 ORTHO05D003618 6.6e-16 88.2 134 38.8
QL04p055623 Quercus lobata HOM05D003118 ORTHO05D003618 1.9e-15 86.7 134 37.3
PSO384G4267 Papaver somniferum HOM05D003118 ORTHO05D003618 2.5e-15 86.3 141 38.3
THA.LOC104809363 Tarenaya hassleriana HOM05D003118 ORTHO05D003618 2.5e-15 86.3 127 39.4
Lsat_1_v5_gn_6_84940 Lactuca sativa HOM05D003118 ORTHO05D003618 3.3e-15 85.9 134 38.8
PSO266G0031 Papaver somniferum HOM05D003118 ORTHO05D003618 3.3e-15 85.9 143 38.5
vmacro11412 Vaccinium macrocarpon HOM05D003118 ORTHO05D003618 3.3e-15 85.9 108 46.3
HanXRQChr17g0533861 Helianthus annuus HOM05D003118 ORTHO05D003618 5.6e-15 85.1 136 38.2
Lsat_1_v5_gn_3_11501 Lactuca sativa HOM05D003118 ORTHO05D003618 5.6e-15 85.1 136 39.7
CARHR287630 Cardamine hirsuta HOM05D003118 ORTHO05D003618 7.3e-15 84.7 135 34.1
Sed0003885 Sechium edule HOM05D003118 ORTHO05D003618 7.3e-15 84.7 139 38.8
Aqoxy7G00197 Aquilegia oxysepala HOM05D003118 ORTHO05D003618 9.5e-15 84.3 130 39.2
CANSAT21G0202 Cannabis sativa HOM05D003118 ORTHO05D003618 9.5e-15 84.3 134 40.3
AUR62019759 Chenopodium quinoa HOM05D003118 ORTHO05D003618 9.5e-15 84.3 135 37.8
Aa31LG9G490 Aethionema arabicum HOM05D003118 ORTHO05D003618 1.6e-14 83.6 134 35.8
Ah.12g052020 Amaranthus hybridus HOM05D003118 ORTHO05D003618 1.6e-14 83.6 156 35.9
BolC6t37186H Brassica oleracea HOM05D003118 ORTHO05D003618 1.6e-14 83.6 142 34.5
arahy.Tifrunner.gnm1.ann1.9S2WM4 Arachis hypogaea HOM05D003118 ORTHO05D003618 2.1e-14 83.2 133 37.6
AUR62010758 Chenopodium quinoa HOM05D003118 ORTHO05D003618 2.1e-14 83.2 127 37.0
ECA246G2781 Erigeron canadensis HOM05D003118 ORTHO05D003618 2.1e-14 83.2 152 37.5
SGA_v2.0_scaffold144G35901 Striga asiatica HOM05D003118 ORTHO05D003618 2.1e-14 83.2 137 34.3
CsaV3_5G002370 Cucumis sativus L. HOM05D003118 ORTHO05D003618 2.8e-14 82.8 134 34.3
Haze_15568 Corylus avellana HOM05D003118 ORTHO05D003618 3.6e-14 82.4 155 33.5
HanXRQChr06g0166221 Helianthus annuus HOM05D003118 ORTHO05D003618 3.6e-14 82.4 154 34.4
Nitab4.5_0000915g0080 Nicotiana tabacum HOM05D003118 ORTHO05D003618 3.6e-14 82.4 147 33.3
arahy.Tifrunner.gnm1.ann1.78DXCF Arachis hypogaea HOM05D003118 ORTHO05D003618 4.7e-14 82.0 133 36.8
ClCG01G002310 Citrullus lanatus HOM05D003118 ORTHO05D003618 4.7e-14 82.0 134 35.1
HanXRQChr13g0416081 Helianthus annuus HOM05D003118 ORTHO05D003618 4.7e-14 82.0 126 37.3
Medtr5g009920 Medicago truncatula HOM05D003118 ORTHO05D003618 8.0e-14 81.3 134 36.6
THA.LOC104823601 Tarenaya hassleriana HOM05D003118 ORTHO05D003618 1.0e-13 80.9 125 37.6
BcaB03g13535 Brassica carinata HOM05D003118 ORTHO05D003618 1.8e-13 80.1 133 36.8
DCAR_000636 Daucus carota HOM05D003118 ORTHO05D003618 1.8e-13 80.1 124 41.1
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 2.3e-13 79.7 139 36.0
Nitab4.5_0010695g0020 Nicotiana tabacum HOM05D003118 ORTHO05D003618 2.3e-13 79.7 130 35.4
PSO063G6388 Papaver somniferum HOM05D003118 ORTHO05D003618 3.0e-13 79.3 147 34.7
PSO170G3062 Papaver somniferum HOM05D003118 ORTHO05D003618 3.0e-13 79.3 147 34.7
Nn6g32462 Nelumbo nucifera HOM05D003118 ORTHO05D003618 4.0e-13 79.0 128 37.5
EL10Ac5g12842 Beta vulgaris HOM05D003118 ORTHO05D003618 5.2e-13 78.6 74 50.0
ECA240G3271 Erigeron canadensis HOM05D000115 ORTHO05D003618 5.2e-13 78.6 134 37.3
LjContig00312_ERROPOS870357g0002156 Lotus japonicus HOM05D003118 ORTHO05D003618 6.8e-13 78.2 125 36.8
BraA08t35403Z Brassica rapa HOM05D003118 ORTHO05D003618 1.2e-12 77.4 133 34.6
Medtr8g447390 Medicago truncatula HOM05D003118 ORTHO05D003618 1.5e-12 77.0 134 35.8
Peaxi162Scf00020g01526 Petunia axillaris HOM05D003118 ORTHO05D003618 1.5e-12 77.0 123 36.6
A08p34920 Brassica napus HOM05D003118 ORTHO05D003618 2.0e-12 76.6 133 33.8
PSO266G0003 Papaver somniferum HOM05D003118 ORTHO05D003618 2.0e-12 76.6 143 35.0
BolC8t48874H Brassica oleracea HOM05D003118 ORTHO05D003618 3.4e-12 75.9 154 31.8
BcaC07g41918 Brassica carinata HOM05D003118 ORTHO05D003618 5.7e-12 75.1 146 31.5
C08p49770 Brassica napus HOM05D003118 ORTHO05D003618 5.7e-12 75.1 146 31.5
BolC8t52504H Brassica oleracea HOM05D003118 ORTHO05D003618 5.7e-12 75.1 146 31.5
MBI07_g11721_MAGBIO Magnolia biondii HOM05D003118 ORTHO05D003618 7.5e-12 74.7 126 34.9
SalBow8G1076 Salvia bowleyana HOM05D003118 ORTHO05D003618 7.5e-12 74.7 135 34.1
Sed0011553 Sechium edule HOM05D003118 ORTHO05D003618 7.5e-12 74.7 136 35.3
Sp1g07530 Schrenkiella parvula HOM05D003118 ORTHO05D003618 1.7e-11 73.6 144 31.2
Sopen01g038920 Solanum pennellii HOM05D003118 ORTHO05D003618 3.7e-11 72.4 132 31.8
C08p12330 Brassica napus HOM05D003118 ORTHO05D003618 6.4e-11 71.6 152 30.9
Solyc01g095130.4 Solanum lycopersicum HOM05D003118 ORTHO05D003618 1.1e-10 70.9 130 32.3
BraA09t41913Z Brassica rapa HOM05D003118 ORTHO05D003618 2.4e-10 69.7 133 31.6
A09p65700 Brassica napus HOM05D003118 ORTHO05D003618 3.2e-10 69.3 124 32.3
AT1G08910 Arabidopsis thaliana HOM05D003118 ORTHO05D003618 4.1e-10 68.9 125 32.0
TPR.G24280 Trifolium pratense HOM05D003118 ORTHO05D003618 5.4e-10 68.6 134 34.3
BcaB07g34111 Brassica carinata HOM05D003118 ORTHO05D003618 7.0e-10 68.2 126 33.3
CiPaw.12G088800 Carya illinoinensis HOM05D003118 ORTHO05D003618 1.2e-09 67.4 147 34.7
AL1G19340 Arabidopsis lyrata HOM05D003118 ORTHO05D003618 2.0e-09 66.6 133 29.3
Carub.0001s0824 Capsella rubella HOM05D003118 ORTHO05D003618 2.0e-09 66.6 132 28.0
HPP92_002895 Vanilla planifolia HOM05D003118 ORTHO05D003618 2.0e-09 66.6 150 28.7
HPP92_002884 Vanilla planifolia HOM05D003118 ORTHO05D003618 2.7e-09 66.2 150 28.7
Cc02_g38610 Coffea canephora HOM05D003118 ORTHO05D003618 5.9e-09 65.1 134 29.9
HPP92_000528 Vanilla planifolia HOM05D003118 ORTHO05D003618 5.9e-09 65.1 149 30.2
A06p05760 Brassica napus HOM05D003118 ORTHO05D003618 1.7e-08 63.5 112 33.9
Os06g0164000 Oryza sativa ssp. japonica HOM05D003118 ORTHO05D003618 1.7e-08 63.5 126 30.2
TPR.G24909 Trifolium pratense HOM05D003118 ORTHO05D003618 2.3e-08 63.2 126 34.1
MELO3C005717.2 Cucumis melo HOM05D003118 ORTHO05D003618 5.0e-08 62.0 144 29.9
Thhalv10007035m.g Eutrema salsugineum HOM05D003118 ORTHO05D003618 5.0e-08 62.0 58 48.3
BraA06t23787Z Brassica rapa HOM05D003118 ORTHO05D003618 8.6e-08 61.2 95 36.8
CARHR008810 Cardamine hirsuta HOM05D003118 ORTHO05D003618 8.6e-08 61.2 126 30.2
SEGI_33305 Sequoiadendron giganteum HOM05D003118 ORTHO05D003618 3.3e-07 59.3 128 28.9
CDE10G1109 Ceratophyllum demersum HOM05D003118 ORTHO05D003618 5.6e-07 58.5 73 38.4
Aa31sc17G150 Aethionema arabicum HOM05D003118 ORTHO05D003618 9.5e-07 57.8 111 36.9
PGSC0003DMG400000196 Solanum tuberosum HOM05D003118 ORTHO05D003618 9.5e-07 57.8 57 43.9
Medtr3g107340 Medicago truncatula HOM05D003118 ORTHO05D003618 1.6e-06 57.0 50 56.0
BolC5t29453H Brassica oleracea HOM05D003118 ORTHO05D032428 2.8e-06 56.2 71 40.8
C05p06950 Brassica napus HOM05D003118 ORTHO05D003618 4.7e-06 55.5 67 43.3
Ciclev10024541m.g Citrus clementina HOM05D003118 ORTHO05D003618 4.7e-06 55.5 76 46.1


User provided reference genes

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