Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 7.4e-306 1053.1 561 100.0
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 2.4e-227 792.3 569 71.7
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 4.0e-227 791.6 567 71.1
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 2.2e-225 785.8 561 73.3
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 6.4e-225 784.3 570 70.5
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 1.1e-224 783.5 572 70.8
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 2.4e-224 782.3 566 72.1
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.2e-224 781.9 568 73.2
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 4.2e-224 781.6 570 71.1
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 5.4e-224 781.2 566 72.8
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 1.2e-223 780.0 570 74.6
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.6e-223 779.6 568 73.2
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.1e-222 774.6 570 70.2
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 8.7e-222 773.9 499 77.2
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 8.7e-222 773.9 569 73.1
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 8.7e-222 773.9 566 70.0
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 1.5e-221 773.1 567 68.8
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.9e-221 772.7 499 77.0
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 7.3e-221 770.8 569 70.1
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.6e-220 769.6 499 77.2
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 3.6e-220 768.5 569 70.8
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.8e-219 766.1 568 72.0
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 2.4e-219 765.8 568 72.2
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 2.4e-219 765.8 548 72.1
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 4.0e-219 765.0 564 69.9
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 9.0e-219 763.8 571 69.9
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 1.2e-218 763.5 567 71.8
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 1.5e-218 763.1 545 71.4
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.0e-218 762.7 569 69.9
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 3.4e-218 761.9 569 70.1
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 9.9e-218 760.4 501 74.9
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 2.9e-217 758.8 499 76.8
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 8.4e-217 757.3 558 69.9
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 8.4e-217 757.3 569 69.8
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 3.2e-216 755.4 569 68.9
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 4.2e-216 755.0 567 70.7
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 7.1e-216 754.2 566 69.3
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 9.3e-216 753.8 568 69.0
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 4.6e-215 751.5 500 74.4
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 3.0e-214 748.8 502 73.5
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 5.1e-214 748.0 500 74.4
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 5.1e-214 748.0 569 70.1
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 9.6e-213 743.8 572 70.3
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 6.2e-212 741.1 484 76.9
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 8.1e-212 740.7 568 66.5
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 8.1e-212 740.7 569 67.1
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 1.1e-211 740.3 570 71.1
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 1.8e-211 739.6 568 67.4
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 4.5e-210 734.9 569 67.0
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 9.9e-210 733.8 570 67.7
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 1.3e-209 733.4 501 73.3
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 6.4e-209 731.1 571 67.6
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 8.4e-209 730.7 505 72.9
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.4e-208 729.9 488 74.2
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 1.9e-208 729.6 569 65.6
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 3.2e-208 728.8 575 65.6
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 3.2e-208 728.8 501 73.5
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 1.2e-207 726.9 500 73.0
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 2.1e-207 726.1 568 66.4
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 2.7e-207 725.7 568 66.0
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 2.7e-207 725.7 565 66.0
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 1.0e-206 723.8 556 70.1
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.0e-206 722.2 568 69.7
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 6.7e-206 721.1 570 66.1
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 6.9e-203 711.1 502 71.3
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.5e-202 709.9 501 71.7
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 4.5e-202 708.4 428 80.4
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 7.6e-202 707.6 580 64.5
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 7.6e-202 707.6 568 64.4
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 7.6e-202 707.6 502 71.3
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.0e-201 707.2 501 71.5
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 2.2e-201 706.1 566 65.5
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.9e-200 703.0 501 71.3
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 4.2e-200 701.8 572 68.5
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 5.5e-200 701.4 566 65.7
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 9.3e-200 700.7 502 69.9
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 2.1e-199 699.5 502 71.5
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 4.6e-199 698.4 497 71.4
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 4.6e-199 698.4 571 65.1
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 6.7e-198 694.5 501 70.7
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.1e-197 693.7 574 64.1
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 1.1e-197 693.7 564 65.1
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.9e-197 693.0 504 69.6
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.5e-197 692.6 571 66.9
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 3.3e-197 692.2 502 69.5
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 9.6e-197 690.6 572 65.6
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 9.6e-197 690.6 502 69.5
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 4.8e-196 688.3 570 66.1
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.4e-195 686.8 558 64.7
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 1.4e-195 686.8 564 63.5
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 1.8e-195 686.4 500 70.4
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 1.5e-194 683.3 565 65.7
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 2.0e-194 682.9 564 63.3
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 2.5e-192 676.0 575 63.3
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 7.2e-192 674.5 572 61.7
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 2.7e-191 672.5 572 65.6
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 6.1e-191 671.4 560 66.1
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 1.3e-190 670.2 497 69.2
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 3.0e-190 669.1 499 67.1
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.9e-189 666.4 478 70.9
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 1.9e-189 666.4 567 63.7
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 3.3e-189 665.6 584 64.0
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 4.8e-188 661.8 582 63.7
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 8.2e-188 661.0 503 66.6
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 4.1e-187 658.7 498 67.3
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 7.7e-186 654.4 511 65.6
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 6.5e-185 651.4 554 62.1
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 1.8e-182 643.3 500 63.0
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 5.1e-182 641.7 420 75.2
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 5.7e-181 638.3 573 60.6
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 6.1e-175 618.2 506 62.5
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 2.4e-171 606.3 503 61.8
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 4.1e-171 605.5 500 61.8
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 9.1e-171 604.4 506 61.5
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 4.2e-168 595.5 352 80.7
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 9.7e-165 584.3 501 64.5
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 1.7e-164 583.6 500 58.6
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 4.8e-164 582.0 384 72.1
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 6.3e-164 581.6 497 60.2
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 4.1e-163 578.9 445 64.5
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 9.2e-139 498.0 497 51.5
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 1.2e-138 497.7 496 51.2
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 3.0e-137 493.0 482 60.8
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 3.7e-132 476.1 499 49.3
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 2.5e-128 463.4 495 52.3
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 9.8e-125 451.4 511 45.4
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 1.9e-120 437.2 258 78.7
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 4.1e-115 419.5 492 46.7
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.3e-105 387.1 471 48.2
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 6.6e-105 385.6 449 52.8
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 4.0e-102 376.3 502 47.0
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.7e-92 344.4 303 61.7
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 3.2e-91 340.1 302 55.6
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 3.9e-89 333.2 471 40.6
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 1.1e-78 298.5 381 46.5
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 2.8e-71 273.9 337 41.8
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 1.7e-68 264.6 326 40.2
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 1.4e-67 261.5 273 55.7
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.9e-51 208.0 570 31.4
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 1.0e-44 185.7 240 48.3
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 3.6e-34 150.6 535 24.1
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 1.8e-30 138.3 172 50.0
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 3.6e-18 97.4 92 60.9
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 5.0e-12 77.0 66 62.1
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 5.2e-09 67.0 55 67.3
Haze_07633 Corylus avellana HOM05D000453 ORTHO05D000387 3.7e-07 60.8 305 22.6
PRCOL_00005569 Prasinoderma coloniale HOM05D012385 ORTHO05D014380 4.9e-07 60.5 181 29.3
Hund06772 Selenicereus undatus HOM05D002668 ORTHO05D003295 1.1e-06 59.3 198 28.3
Cre04.g217914 Chlamydomonas reinhardtii HOM05D012385 ORTHO05D014380 5.4e-06 57.0 188 27.7


User provided reference genes

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