Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 2.2e-79 298.9 154 100.0
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 7.3e-46 187.6 153 71.2
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 2.1e-45 186.0 152 67.8
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 4.0e-44 181.8 152 66.4
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 1.5e-43 179.9 151 67.5
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 1.5e-43 179.9 152 66.4
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 2.0e-43 179.5 154 67.5
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 2.2e-42 176.0 152 61.8
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 2.2e-42 176.0 151 64.9
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 3.7e-42 175.3 159 64.2
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 4.9e-42 174.9 153 67.3
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 6.4e-42 174.5 156 62.8
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 8.3e-42 174.1 153 63.4
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 8.3e-42 174.1 153 63.4
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 1.9e-41 172.9 163 63.8
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 4.1e-41 171.8 157 63.7
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 9.2e-41 170.6 158 65.8
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 1.2e-40 170.2 150 66.7
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 1.2e-40 170.2 149 65.1
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 1.6e-40 169.9 150 62.7
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.6e-40 169.9 158 62.7
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 2.1e-40 169.5 154 64.9
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 2.1e-40 169.5 152 62.5
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 6.0e-40 167.9 154 61.7
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 7.8e-40 167.5 150 62.7
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 1.0e-39 167.2 150 63.3
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 1.7e-39 166.4 154 61.0
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 3.0e-39 165.6 153 63.4
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 3.0e-39 165.6 147 63.9
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 5.1e-39 164.9 150 63.3
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 6.6e-39 164.5 156 63.5
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 1.1e-38 163.7 153 62.7
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 1.5e-38 163.3 154 61.0
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 1.9e-38 162.9 147 63.9
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 2.5e-38 162.5 147 63.9
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 2.5e-38 162.5 141 66.0
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 3.3e-38 162.2 154 61.0
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 5.6e-38 161.4 150 62.7
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 5.6e-38 161.4 154 57.8
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 7.3e-38 161.0 153 61.4
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 9.5e-38 160.6 153 62.1
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 9.5e-38 160.6 153 62.1
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 2.1e-37 159.5 154 61.0
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 2.8e-37 159.1 154 59.1
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 2.8e-37 159.1 152 59.2
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 2.8e-37 159.1 152 57.9
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 3.6e-37 158.7 153 61.4
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 4.7e-37 158.3 151 60.3
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 1.4e-36 156.8 152 57.9
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.4e-36 156.8 152 57.9
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 1.8e-36 156.4 152 59.9
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.8e-36 156.4 152 59.2
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 2.3e-36 156.0 152 57.9
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 2.3e-36 156.0 152 60.5
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 3.1e-36 155.6 155 58.1
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 3.1e-36 155.6 150 60.0
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 3.1e-36 155.6 154 57.1
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 4.0e-36 155.2 152 57.9
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 5.2e-36 154.8 155 60.0
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 6.8e-36 154.5 148 59.5
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 6.8e-36 154.5 154 59.1
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 1.5e-35 153.3 153 60.1
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 2.0e-35 152.9 152 60.5
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 3.4e-35 152.1 151 58.9
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 9.9e-35 150.6 157 54.1
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 1.3e-34 150.2 152 53.3
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 1.3e-34 150.2 153 54.2
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 1.3e-34 150.2 152 55.3
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 1.3e-34 150.2 152 54.6
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 1.7e-34 149.8 148 58.1
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 1.7e-34 149.8 152 56.6
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 1.7e-34 149.8 152 55.3
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 2.2e-34 149.4 152 61.2
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 2.9e-34 149.1 152 55.3
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 3.7e-34 148.7 145 59.3
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 3.7e-34 148.7 151 56.3
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 6.4e-34 147.9 152 55.9
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 6.4e-34 147.9 149 56.4
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 8.4e-34 147.5 152 55.3
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 1.4e-33 146.7 149 58.4
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 1.9e-33 146.4 151 57.6
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 1.9e-33 146.4 151 57.6
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 2.4e-33 146.0 137 59.9
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 4.1e-33 145.2 139 62.6
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 9.2e-33 144.1 153 54.2
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.2e-32 143.7 138 61.6
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 1.2e-32 143.7 152 53.9
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 1.6e-32 143.3 153 54.2
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 1.6e-32 143.3 155 54.2
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 2.1e-32 142.9 151 54.3
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 2.1e-32 142.9 155 56.1
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.7e-32 142.5 138 63.0
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 3.5e-32 142.1 154 53.9
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 4.6e-32 141.7 158 57.0
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 6.0e-32 141.4 153 52.3
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 1.0e-31 140.6 152 52.0
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 2.3e-31 139.4 142 59.9
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 5.1e-31 138.3 154 57.8
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 5.1e-31 138.3 152 51.3
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 1.9e-30 136.3 152 53.9
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 5.6e-30 134.8 141 58.9
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 7.3e-30 134.4 152 50.7
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 7.3e-30 134.4 154 51.3
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 3.6e-29 132.1 148 52.0
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 3.6e-29 132.1 148 52.0
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 3.6e-29 132.1 148 52.0
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 3.6e-29 132.1 148 52.0
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 4.7e-29 131.7 148 52.0
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 1.4e-28 130.2 154 49.4
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 5.2e-28 128.3 153 51.6
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 5.4e-25 118.2 151 47.7
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 2.1e-24 116.3 126 54.0
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 4.6e-24 115.2 140 50.0
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 1.7e-23 113.2 147 46.3
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 1.1e-22 110.5 127 52.8
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 5.6e-22 108.2 147 49.0
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 6.2e-21 104.8 150 46.7
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 6.9e-20 101.3 128 50.8
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 7.6e-19 97.8 144 43.8
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 7.1e-17 91.3 147 39.5
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 1.2e-16 90.5 124 47.6
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 2.3e-15 86.3 62 67.7
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 3.0e-15 85.9 149 41.6
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 6.6e-15 84.7 80 53.8
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 1.9e-14 83.2 68 61.8
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 5.8e-11 71.6 106 43.4
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 1.3e-10 70.5 152 33.6
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 1.2e-08 63.9 61 50.8
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 4.6e-08 62.0 55 58.2
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 3.9e-07 58.9 51 60.8


User provided reference genes

Program Settings