Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 0.0e+00 1330.5 733 100.0
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 1.3e-145 521.2 727 50.5
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 6.8e-142 508.8 766 49.5
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 1.2e-135 488.0 748 48.3
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 3.2e-131 473.4 685 48.9
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 4.6e-130 469.5 686 48.8
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 2.1e-127 460.7 745 48.7
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 5.2e-126 456.1 745 49.0
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 6.0e-122 442.6 694 49.1
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 7.8e-122 442.2 743 44.0
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.1e-119 434.1 732 44.1
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.1e-118 431.8 760 42.9
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 2.4e-118 430.6 733 43.9
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 4.1e-115 419.9 741 44.4
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 2.3e-113 414.1 747 43.4
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.3e-113 414.1 747 43.4
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.9e-112 411.0 738 43.1
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 3.3e-112 410.2 737 43.3
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 4.3e-112 409.8 773 42.0
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 6.2e-111 406.0 761 42.7
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.4e-110 404.8 796 41.0
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 1.4e-110 404.8 720 43.2
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 5.2e-110 402.9 551 49.9
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.3e-105 388.3 742 43.0
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 3.0e-105 387.1 771 39.9
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 1.9e-104 384.4 701 44.1
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 3.3e-104 383.6 734 39.8
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 1.6e-103 381.3 523 49.3
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 9.0e-102 375.6 795 39.6
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 2.2e-100 370.9 623 44.3
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 3.8e-100 370.2 635 44.9
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 1.1e-99 368.6 669 46.5
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 7.1e-99 365.9 757 40.6
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.6e-98 364.8 760 40.8
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 4.3e-96 356.7 566 48.6
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 4.8e-95 353.2 738 40.0
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.8e-94 351.3 748 41.8
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 4.0e-94 350.1 781 38.0
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 4.5e-93 346.7 741 39.4
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 1.3e-92 345.1 777 36.6
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 1.6e-90 338.2 741 39.4
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.1e-87 327.8 769 37.3
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 2.1e-87 327.8 721 38.0
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.4e-86 325.1 849 36.4
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 1.8e-86 324.7 724 39.9
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 4.0e-86 323.6 779 36.5
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 5.5e-83 313.2 777 40.5
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 2.1e-82 311.2 759 37.4
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 1.8e-81 308.1 746 36.5
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 3.9e-81 307.0 748 37.6
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 5.1e-81 306.6 724 37.7
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 5.3e-78 296.6 719 36.9
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 1.7e-76 291.6 834 33.6
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 5.0e-76 290.0 727 38.1
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 8.5e-76 289.3 644 38.5
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 1.4e-75 288.5 754 34.5
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 3.2e-75 287.3 740 36.8
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 4.2e-75 287.0 748 36.0
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 5.5e-75 286.6 580 41.7
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 5.5e-75 286.6 772 38.3
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 7.2e-75 286.2 841 33.2
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 2.1e-74 284.6 728 37.0
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 6.1e-74 283.1 746 35.4
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 7.9e-74 282.7 630 40.5
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.4e-73 282.0 745 35.3
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 5.1e-73 280.0 761 34.8
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 6.7e-73 279.6 743 38.1
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 6.7e-73 279.6 649 37.3
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 1.1e-72 278.9 733 37.9
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 1.1e-72 278.9 748 34.8
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 1.9e-72 278.1 752 35.9
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 4.3e-72 276.9 589 43.5
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 7.4e-72 276.2 735 37.8
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 7.4e-72 276.2 755 35.8
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 1.3e-71 275.4 731 35.4
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 1.7e-71 275.0 735 37.8
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 3.7e-71 273.9 768 34.8
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 4.8e-71 273.5 814 33.2
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 8.2e-71 272.7 735 36.9
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 8.2e-71 272.7 755 35.0
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 4.5e-69 266.9 562 39.0
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 5.9e-69 266.5 762 34.6
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 7.7e-69 266.2 759 34.7
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 5.0e-68 263.5 751 35.0
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 5.1e-65 253.4 526 38.6
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.6e-64 251.1 683 36.6
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 5.7e-64 250.0 586 37.4
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 3.7e-63 247.3 805 31.3
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 6.3e-63 246.5 533 38.5
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 2.4e-62 244.6 754 33.7
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 3.4e-61 240.7 569 38.0
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 4.5e-61 240.4 765 33.6
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 1.0e-60 239.2 654 35.9
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 3.8e-60 237.3 855 30.9
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 5.0e-60 236.9 229 57.6
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 3.2e-59 234.2 351 46.4
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 4.2e-59 233.8 743 32.4
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 5.5e-59 233.4 582 36.3
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.6e-58 231.9 721 32.3
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 8.0e-58 229.6 747 31.5
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 8.0e-58 229.6 294 48.3
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.4e-57 228.8 676 33.7
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 3.9e-57 227.3 737 34.1
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 9.7e-56 222.6 424 40.3
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 2.8e-55 221.1 406 45.6
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 5.3e-54 216.9 726 31.8
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 3.5e-53 214.2 210 61.9
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 7.7e-53 213.0 756 33.7
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.7e-52 211.8 778 30.6
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 2.2e-44 184.9 506 36.4
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 3.2e-43 181.0 506 37.4
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.8e-38 165.2 486 35.0
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 1.4e-30 139.0 142 60.6
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 2.4e-30 138.3 727 28.7
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 1.2e-29 136.0 635 27.7
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.2e-29 136.0 562 29.9
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 3.6e-26 124.4 607 27.2
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 6.1e-26 123.6 91 68.1
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 6.8e-25 120.2 414 33.6
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.5e-24 119.0 583 26.8
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.2e-23 115.2 398 31.9
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 3.0e-20 104.8 115 60.9
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 1.5e-16 92.4 89 53.9
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 3.7e-15 87.8 155 43.2
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 4.3e-11 74.3 71 49.3
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 9.5e-11 73.2 67 62.7
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 2.8e-10 71.6 57 59.6
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 4.7e-10 70.9 183 34.4
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.9e-09 66.6 239 31.4
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 9.9e-08 63.2 61 57.4
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 2.2e-07 62.0 78 46.2
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 7.1e-06 57.0 46 52.2
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 9.2e-06 56.6 72 55.6


User provided reference genes

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