Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 4.0e-187 657.9 325 100.0
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 8.5e-137 490.7 323 75.5
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.2e-135 486.9 317 74.4
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.1e-135 486.1 317 74.4
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 1.8e-134 483.0 311 75.2
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.3e-134 482.6 318 73.3
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 3.0e-134 482.3 318 73.9
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 5.1e-134 481.5 318 73.3
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.1e-134 481.5 317 74.1
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 8.8e-134 480.7 318 73.0
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 1.5e-133 479.9 323 73.4
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 2.0e-133 479.6 323 73.7
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 5.7e-133 478.0 323 72.1
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 9.7e-133 477.2 310 74.5
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.7e-132 476.5 323 73.1
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 3.7e-132 475.3 323 72.1
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 4.8e-132 474.9 323 72.8
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 4.8e-132 474.9 323 72.4
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 8.2e-132 474.2 323 72.4
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 8.2e-132 474.2 318 73.0
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 1.4e-131 473.4 323 73.1
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 1.8e-131 473.0 323 72.4
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 4.1e-131 471.9 324 72.8
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 5.3e-131 471.5 322 72.0
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 7.0e-131 471.1 317 72.6
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 7.0e-131 471.1 323 71.8
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 9.1e-131 470.7 323 72.4
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.2e-130 470.3 316 72.8
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 1.2e-130 470.3 322 73.0
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.6e-130 469.9 305 73.1
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 3.5e-130 468.8 323 71.8
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 3.5e-130 468.8 323 71.5
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 4.5e-130 468.4 323 71.8
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 4.5e-130 468.4 323 71.8
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 4.5e-130 468.4 322 71.7
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 5.9e-130 468.0 305 74.4
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 5.9e-130 468.0 323 71.5
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 7.7e-130 467.6 324 72.5
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 1.0e-129 467.2 324 71.9
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.0e-129 467.2 322 72.4
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.0e-129 467.2 322 72.4
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.0e-129 467.2 304 75.0
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 2.2e-129 466.1 322 72.0
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.2e-129 466.1 323 71.5
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 2.9e-129 465.7 322 72.0
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 2.9e-129 465.7 322 72.0
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.8e-129 465.3 323 71.2
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 5.0e-129 464.9 305 73.4
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 6.5e-129 464.5 319 72.1
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 8.5e-129 464.2 323 71.2
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.1e-128 463.8 323 71.5
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 1.5e-128 463.4 308 72.4
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 1.5e-128 463.4 323 71.2
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.5e-128 463.4 323 72.1
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 2.5e-128 462.6 323 70.9
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 3.2e-128 462.2 324 71.3
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 3.2e-128 462.2 323 71.5
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 3.2e-128 462.2 310 72.6
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 3.2e-128 462.2 310 72.6
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 2.7e-127 459.1 325 69.8
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 3.6e-127 458.8 325 68.0
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 4.7e-127 458.4 323 69.0
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 6.1e-127 458.0 323 71.5
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 1.4e-126 456.8 322 70.5
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 1.8e-126 456.4 305 71.1
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.8e-126 456.4 323 70.9
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 1.8e-126 456.4 325 69.5
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 2.3e-126 456.1 323 69.3
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.3e-126 456.1 311 71.4
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 3.0e-126 455.7 307 69.7
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 4.0e-126 455.3 322 71.4
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 8.8e-126 454.1 303 70.3
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 1.1e-125 453.8 318 70.1
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 2.0e-125 453.0 320 69.4
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 2.6e-125 452.6 323 69.0
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 9.7e-125 450.7 327 67.3
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.3e-124 450.3 318 67.9
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 1.7e-124 449.9 302 70.2
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.8e-124 449.1 322 69.9
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.7e-124 448.7 309 69.3
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.8e-124 448.4 322 66.8
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 4.8e-124 448.4 306 69.3
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 6.3e-124 448.0 323 68.4
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 1.1e-123 447.2 320 70.9
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.1e-123 447.2 320 69.7
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 2.4e-123 446.0 312 68.6
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.1e-123 445.3 318 67.9
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.2e-122 443.7 311 70.1
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 1.6e-122 443.4 324 66.7
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.6e-122 443.4 311 70.7
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 4.5e-122 441.8 313 69.3
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 6.5e-121 438.0 320 68.8
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 1.1e-120 437.2 328 68.0
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.1e-120 437.2 323 68.4
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 3.2e-120 435.6 320 69.4
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 7.2e-120 434.5 313 68.7
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 2.1e-119 433.0 304 69.7
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.8e-118 429.9 320 68.1
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 2.3e-118 429.5 312 67.6
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 3.0e-118 429.1 304 70.7
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 1.2e-117 427.2 314 66.9
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 7.5e-117 424.5 310 67.4
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 7.5e-117 424.5 310 69.0
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.3e-116 423.7 310 67.7
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.7e-116 423.3 403 55.3
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 3.7e-116 422.2 334 64.7
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 4.8e-116 421.8 317 68.1
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.3e-116 421.4 321 64.5
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 6.3e-116 421.4 317 67.2
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 8.3e-116 421.0 319 66.1
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 1.1e-115 420.6 317 65.9
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.1e-115 420.6 322 64.3
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 1.4e-115 420.2 310 67.4
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 4.1e-115 418.7 312 66.3
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 7.7e-114 414.5 318 65.7
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 2.9e-113 412.5 318 61.6
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 6.5e-113 411.4 307 63.2
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 1.0e-110 404.1 443 51.9
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 1.4e-110 403.7 333 60.7
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.3e-110 402.9 299 64.9
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 3.4e-109 399.1 267 70.4
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 4.4e-109 398.7 305 64.9
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 9.2e-107 391.0 296 66.6
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.6e-106 390.2 323 63.2
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 4.4e-101 372.1 311 62.4
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.4e-99 367.1 264 69.3
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 1.7e-97 360.1 316 54.4
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 2.3e-97 359.8 315 56.8
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 5.2e-94 348.6 331 53.8
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.5e-93 347.1 287 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 2.0e-90 336.7 324 54.0
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 7.1e-83 311.6 315 51.4
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.5e-80 303.9 232 64.2
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 3.9e-73 279.3 255 58.8
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.0e-70 269.2 272 54.0
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.4e-60 235.3 217 60.4
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.5e-56 224.2 284 44.0
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 1.2e-42 177.9 130 61.5
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 2.7e-34 150.2 93 79.6
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.1e-32 144.8 86 79.1
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.6e-26 124.4 78 73.1
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 2.5e-19 100.5 83 60.2
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 1.4e-17 94.7 83 59.0
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 2.3e-17 94.0 62 71.0
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 7.4e-16 89.0 69 63.8
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 7.5e-08 62.4 64 50.0


User provided reference genes

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