Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 9.2e-99 363.6 191 100.0
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.0e-81 307.0 183 85.8
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.9e-80 302.8 193 81.3
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.6e-80 301.2 196 80.6
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.5e-77 293.1 191 79.6
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 2.0e-77 292.7 180 82.2
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 2.6e-77 292.4 187 79.1
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 4.9e-76 288.1 183 80.3
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 2.4e-75 285.8 197 76.6
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 7.1e-75 284.3 164 86.6
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 7.8e-74 280.8 194 74.2
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.0e-73 280.4 180 77.2
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.3e-73 279.3 179 77.1
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.1e-72 276.9 191 75.4
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.5e-72 276.6 168 79.8
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 4.3e-72 275.0 188 74.5
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 9.6e-72 273.9 180 76.7
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.6e-71 273.1 192 71.4
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.8e-71 272.3 188 76.1
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 4.8e-71 271.6 194 72.7
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 1.1e-70 270.4 177 76.3
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 1.1e-70 270.4 169 80.5
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 2.4e-70 269.2 179 74.9
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 4.0e-70 268.5 183 74.3
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 6.9e-70 267.7 195 71.3
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 9.0e-70 267.3 188 71.3
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.5e-69 266.5 180 74.4
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.5e-69 266.5 191 72.3
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.6e-69 265.8 178 74.7
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 4.5e-69 265.0 176 74.4
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 7.6e-69 264.2 191 70.2
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 9.9e-69 263.8 177 74.6
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.2e-68 262.7 165 77.6
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 2.9e-68 262.3 188 70.7
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 6.4e-68 261.2 187 70.1
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.1e-67 260.4 186 71.0
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.9e-67 259.6 187 69.0
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.9e-67 259.6 190 70.5
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.4e-67 259.2 198 68.2
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 3.2e-67 258.8 177 74.0
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 4.2e-67 258.5 181 71.8
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.1e-67 257.7 184 72.3
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.1e-67 257.7 170 74.1
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.2e-66 256.9 185 70.8
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.6e-66 256.5 179 73.2
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 2.7e-66 255.8 187 69.0
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 2.7e-66 255.8 180 73.3
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 2.7e-66 255.8 180 73.3
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 3.5e-66 255.4 180 73.3
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 3.5e-66 255.4 180 73.3
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 3.5e-66 255.4 178 71.3
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 3.5e-66 255.4 190 69.5
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 4.6e-66 255.0 174 75.3
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 6.0e-66 254.6 197 67.5
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 6.0e-66 254.6 197 67.5
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 6.0e-66 254.6 176 70.5
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 6.0e-66 254.6 192 71.9
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.9e-66 254.2 184 71.7
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.0e-65 253.8 150 80.0
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.3e-65 253.4 190 68.4
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.8e-65 253.1 176 75.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.0e-65 252.3 190 69.5
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.9e-65 251.9 189 68.3
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 3.9e-65 251.9 188 68.1
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 6.7e-65 251.1 179 68.2
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 8.7e-65 250.8 194 67.0
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.1e-64 250.4 191 67.0
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.9e-64 249.6 180 70.0
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 4.3e-64 248.4 183 68.3
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 5.6e-64 248.1 176 69.9
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 5.6e-64 248.1 184 66.8
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 7.4e-64 247.7 161 75.8
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 9.6e-64 247.3 183 68.3
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.3e-63 246.9 205 63.4
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.1e-63 246.1 161 77.0
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 2.1e-63 246.1 181 69.6
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 2.1e-63 246.1 180 68.3
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 4.8e-63 245.0 178 70.2
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 4.8e-63 245.0 178 70.2
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 6.2e-63 244.6 178 70.2
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.1e-62 243.8 190 66.8
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.8e-62 243.0 184 67.9
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 1.8e-62 243.0 170 71.2
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.8e-62 243.0 180 70.0
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.8e-62 243.0 194 64.9
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.1e-62 242.3 187 67.9
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 5.3e-62 241.5 175 64.6
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 9.0e-62 240.7 191 65.4
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-61 240.4 175 68.6
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.2e-61 240.4 187 64.7
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 1.2e-61 240.4 195 62.6
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 3.4e-61 238.8 194 64.4
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 4.5e-61 238.4 178 68.0
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.5e-61 238.4 180 68.9
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 5.8e-61 238.0 184 63.0
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.2e-60 236.1 168 70.8
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 3.8e-60 235.3 215 59.5
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 4.9e-60 235.0 168 70.2
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 6.4e-60 234.6 214 58.9
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 1.1e-59 233.8 169 71.6
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.4e-59 233.4 166 69.3
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.9e-59 233.0 197 66.0
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.9e-59 233.0 181 61.9
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 2.4e-59 232.6 187 64.7
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 3.2e-59 232.3 199 61.3
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.2e-59 231.9 203 63.1
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 4.2e-59 231.9 196 61.2
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 9.3e-59 230.7 159 71.7
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.7e-58 229.2 160 70.0
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 2.7e-58 229.2 172 66.9
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 4.6e-58 228.4 170 68.8
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 4.6e-58 228.4 170 68.8
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.9e-57 225.3 164 68.9
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 8.7e-57 224.2 172 65.1
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 3.3e-56 222.2 172 64.5
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.4e-56 221.1 175 64.0
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.8e-54 216.5 178 66.3
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 4.0e-54 215.3 180 64.4
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.0e-53 213.0 142 72.5
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.6e-53 212.6 185 61.1
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.3e-52 210.3 167 64.7
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 2.2e-52 209.5 182 59.3
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 2.4e-46 189.5 143 68.5
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 9.0e-46 187.6 216 50.0
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 4.5e-45 185.3 179 58.1
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.0e-44 181.8 164 56.7
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 2.5e-43 179.5 150 57.3
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.5e-43 178.3 163 57.1
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 7.4e-40 167.9 163 54.6
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 4.5e-37 158.7 113 69.0
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 2.9e-36 156.0 103 76.7
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.4e-35 153.7 168 48.8
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.9e-35 153.3 171 50.9
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 4.2e-35 152.1 165 48.5
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 2.3e-33 146.4 106 69.8
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 8.8e-33 144.4 93 74.2
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.0e-32 143.3 125 60.0
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.6e-32 142.9 85 77.6
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.7e-32 141.7 99 71.7
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 1.1e-30 137.5 139 52.5
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.4e-30 136.3 91 69.2
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 4.1e-30 135.6 100 67.0
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 2.7e-26 122.9 82 68.3
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 2.3e-25 119.8 82 69.5
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 1.1e-24 117.5 85 71.8
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.3e-20 104.0 165 43.0
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 8.5e-20 101.3 82 64.6
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.1e-19 100.9 68 75.0
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 2.0e-16 90.1 63 74.6
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 9.1e-14 81.3 135 36.3
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 2.5e-11 73.2 76 53.9
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.0e-09 67.8 46 76.1
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 3.0e-09 66.2 41 82.9
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 1.2e-08 64.3 87 42.5
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.4e-08 62.8 96 42.7
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 2.2e-07 60.1 59 47.5


User provided reference genes

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