Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 7.6e-176 620.5 346 100.0
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 1.6e-117 426.8 293 75.4
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 1.8e-116 423.3 341 66.0
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 3.0e-116 422.5 350 67.7
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 6.7e-116 421.4 342 65.8
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 2.0e-115 419.9 342 65.8
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 2.6e-115 419.5 341 65.4
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.6e-115 419.5 354 65.8
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 3.3e-115 419.1 342 66.1
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 1.1e-113 414.1 291 75.6
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 2.4e-113 412.9 294 75.2
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 4.1e-113 412.1 268 78.4
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 4.1e-113 412.1 248 82.7
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 5.3e-113 411.8 244 81.6
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 1.2e-112 410.6 342 67.5
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 3.5e-112 409.1 298 71.8
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 4.5e-112 408.7 275 76.7
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 4.5e-112 408.7 293 73.0
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 1.0e-111 407.5 260 80.0
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 3.8e-111 405.6 344 63.7
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 6.5e-111 404.8 303 71.6
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 8.5e-111 404.4 287 73.5
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 1.9e-110 403.3 260 80.4
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 2.5e-110 402.9 243 82.3
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 2.5e-110 402.9 343 63.8
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 3.2e-110 402.5 303 71.3
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 4.2e-110 402.1 286 72.7
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 4.2e-110 402.1 347 63.1
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 4.2e-110 402.1 261 77.8
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 5.5e-110 401.7 340 64.4
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 5.5e-110 401.7 341 63.9
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 5.5e-110 401.7 286 70.6
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 7.2e-110 401.4 353 64.0
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 9.4e-110 401.0 300 68.7
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 9.4e-110 401.0 253 79.4
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 9.4e-110 401.0 324 65.4
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 1.6e-109 400.2 261 75.9
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 2.1e-109 399.8 344 63.4
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 3.6e-109 399.1 347 63.7
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 6.1e-109 398.3 250 80.4
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 1.0e-108 397.5 254 78.7
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.8e-108 396.7 344 64.0
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 2.3e-108 396.4 256 77.0
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 3.0e-108 396.0 254 77.6
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 3.0e-108 396.0 378 60.6
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 2.0e-107 393.3 268 74.3
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 2.6e-107 392.9 247 78.5
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 4.4e-107 392.1 291 71.5
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 4.4e-107 392.1 253 77.5
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 7.5e-107 391.3 253 77.1
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 9.7e-107 391.0 255 76.1
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 9.7e-107 391.0 256 76.2
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 1.7e-106 390.2 347 60.8
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 3.7e-106 389.0 247 77.3
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 1.1e-105 387.5 247 77.3
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 1.4e-105 387.1 355 60.0
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 2.4e-105 386.3 347 61.4
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 4.1e-105 385.6 246 77.2
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 7.0e-105 384.8 251 74.9
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 7.0e-105 384.8 270 71.5
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 7.0e-105 384.8 253 74.7
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 9.1e-105 384.4 287 70.0
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 9.1e-105 384.4 270 73.3
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 3.5e-104 382.5 347 60.5
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 3.5e-104 382.5 348 60.9
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 3.5e-104 382.5 253 74.3
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 4.5e-104 382.1 349 59.0
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 4.5e-104 382.1 247 75.7
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 4.5e-104 382.1 253 75.9
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 7.7e-104 381.3 342 59.1
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 2.9e-103 379.4 236 77.1
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 6.5e-103 378.3 239 76.2
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 1.5e-102 377.1 280 70.0
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 1.9e-102 376.7 255 72.9
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 4.2e-102 375.6 291 65.3
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 5.5e-102 375.2 255 72.5
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 7.2e-102 374.8 289 67.8
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 7.2e-102 374.8 343 59.8
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 9.4e-102 374.4 246 74.4
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 9.4e-102 374.4 242 76.0
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 2.1e-101 373.2 264 72.0
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 4.7e-101 372.1 238 76.9
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 2.3e-100 369.8 262 70.6
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 3.0e-100 369.4 277 68.6
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 4.0e-100 369.0 227 78.9
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 4.0e-100 369.0 227 78.9
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 5.2e-100 368.6 259 71.4
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 6.8e-100 368.2 276 68.8
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 8.8e-100 367.9 268 70.1
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 5.7e-99 365.2 319 61.8
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 2.2e-98 363.2 284 66.5
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 2.4e-97 359.8 237 75.1
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 7.0e-97 358.2 265 68.3
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 7.0e-97 358.2 280 65.7
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 4.5e-96 355.5 243 72.4
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 5.9e-96 355.1 238 73.1
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 1.7e-95 353.6 211 82.5
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 1.7e-95 353.6 263 68.4
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 2.3e-95 353.2 251 70.5
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 2.9e-95 352.8 225 76.4
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 8.6e-95 351.3 265 69.8
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 2.3e-92 343.2 235 72.8
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 7.5e-91 338.2 211 78.2
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.3e-90 337.4 214 74.8
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.7e-90 337.0 211 75.4
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 1.6e-88 330.5 233 67.4
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.3e-87 327.4 210 73.8
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 1.4e-84 317.4 341 55.4
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 5.8e-83 312.0 254 64.6
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 1.3e-82 310.8 204 75.5
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 5.6e-78 295.4 222 64.9
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 2.8e-77 293.1 227 62.1
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 3.6e-77 292.7 181 80.7
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 8.9e-76 288.1 234 61.1
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 3.4e-75 286.2 226 58.0
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 8.6e-71 271.6 317 53.6
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 4.1e-65 252.7 225 54.2
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 5.4e-65 252.3 157 75.2
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 1.3e-63 247.7 225 59.1
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 5.1e-63 245.7 153 75.8
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 6.6e-63 245.4 175 67.4
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 2.6e-59 233.4 226 52.7
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 2.9e-58 229.9 223 52.5
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.5e-54 216.9 122 82.0
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 3.4e-51 206.5 122 78.7
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 3.1e-44 183.3 154 66.2
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 5.8e-35 152.5 239 39.3
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 8.7e-31 138.7 121 61.2
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 9.0e-28 128.6 68 82.4
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 2.2e-26 124.0 84 72.6
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 4.9e-26 122.9 78 71.8
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 6.5e-26 122.5 76 71.1
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 2.1e-24 117.5 109 57.8
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 6.0e-24 115.9 72 77.8
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.1e-22 111.7 90 60.0
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 9.7e-22 108.6 72 73.6
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 1.1e-14 85.1 101 48.5
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.8e-12 77.8 57 64.9
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 2.4e-12 77.4 85 55.3
MSTRG.17096 Avicennia marina HOM05D005239 ORTHO05D006698 3.0e-07 60.5 36 77.8


User provided reference genes

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