Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.8e-154 549.3 285 100.0
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 4.3e-84 315.5 290 62.8
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 5.2e-82 308.5 288 61.8
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.8e-82 308.1 291 61.2
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 8.4e-80 301.2 286 60.1
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.1e-79 300.8 288 59.7
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.2e-79 299.3 291 60.1
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 7.1e-79 298.1 291 59.5
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.3e-76 289.3 288 59.0
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.6e-76 288.5 286 60.1
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.6e-75 287.0 283 58.7
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 2.1e-75 286.6 265 60.4
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 4.7e-75 285.4 267 59.2
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.4e-74 283.1 289 57.8
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.4e-74 283.1 289 57.8
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 4.9e-72 275.4 286 58.0
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.9e-71 273.5 284 56.3
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 7.1e-71 271.6 294 54.4
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 9.3e-71 271.2 289 56.7
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.7e-70 269.6 294 53.7
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 2.3e-69 266.5 290 56.2
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 3.0e-69 266.2 288 53.5
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 3.9e-69 265.8 287 55.1
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 2.5e-68 263.1 288 53.1
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 7.3e-68 261.5 288 54.9
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 9.9e-65 251.1 267 54.7
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 2.9e-64 249.6 291 51.9
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 4.9e-64 248.8 291 52.6
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 4.9e-64 248.8 296 53.0
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.1e-63 247.7 288 51.0
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.0e-61 241.1 273 53.1
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 9.6e-60 234.6 284 48.2
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 2.8e-59 233.0 281 51.6
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.8e-59 232.3 276 51.4
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.2e-57 227.6 289 51.9
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.5e-57 227.3 265 52.1
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 5.8e-57 225.3 290 51.4
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.3e-56 224.2 243 54.7
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 2.2e-56 223.4 290 48.6
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 4.9e-56 222.2 289 49.1
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 6.4e-56 221.9 265 50.9
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.1e-55 221.1 287 49.5
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.1e-55 221.1 293 49.5
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 2.5e-55 219.9 282 48.6
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 3.5e-54 216.1 288 48.6
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 3.9e-53 212.6 295 48.1
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 2.4e-50 203.4 288 49.0
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 6.9e-50 201.8 282 46.8
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 7.6e-49 198.4 270 48.1
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.2e-48 196.8 287 46.7
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 2.9e-48 196.4 272 47.8
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.5e-47 193.4 283 49.8
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.1e-46 190.3 287 44.9
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.5e-46 189.5 287 45.6
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 6.7e-45 185.3 287 44.3
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 2.5e-44 183.3 284 43.3
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 8.2e-43 178.3 256 47.3
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 4.1e-42 176.0 261 47.5
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.2e-40 170.2 289 42.9
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 5.0e-40 169.1 274 42.7
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 8.5e-40 168.3 251 47.0
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 1.8e-37 160.6 292 40.4
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.8e-37 160.6 289 41.2
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.9e-37 159.5 223 47.1
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 3.9e-37 159.5 289 41.2
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.1e-36 157.9 265 42.6
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 1.5e-36 157.5 292 41.1
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 2.0e-36 157.1 221 47.5
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.3e-36 156.0 268 41.4
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.3e-35 154.5 288 41.3
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-34 151.4 247 42.9
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.4e-34 150.2 318 39.0
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.1e-34 149.8 293 40.6
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 4.5e-33 146.0 276 39.5
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.3e-32 144.4 283 38.5
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 3.8e-32 142.9 276 42.8
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.9e-31 140.6 192 46.9
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 3.2e-31 139.8 237 40.5
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 7.2e-31 138.7 290 38.3
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 4.7e-30 136.0 133 60.9
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.7e-30 136.0 133 60.9
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.7e-30 136.0 133 60.9
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 4.7e-30 136.0 134 62.7
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.0e-29 134.8 264 37.5
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.0e-29 133.3 133 58.6
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.7e-29 132.1 133 59.4
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.1e-28 131.3 299 36.1
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.3e-27 127.9 282 42.6
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.2e-27 127.1 263 38.4
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 5.9e-25 119.0 274 33.9
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 1.0e-24 118.2 279 35.8
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.3e-24 117.9 272 34.9
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.7e-24 117.5 284 37.7
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.7e-24 117.5 278 32.7
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 2.2e-24 117.1 278 32.7
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.0e-24 115.9 273 35.5
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.1e-23 114.8 284 32.7
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.4e-23 114.4 282 35.8
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.9e-23 114.0 210 41.0
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 9.4e-23 111.7 282 37.2
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.2e-22 111.3 287 35.2
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.6e-22 110.9 178 42.1
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 1.6e-22 110.9 265 37.0
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 2.7e-22 110.2 283 34.3
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.4e-21 107.8 290 34.8
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 3.9e-21 106.3 201 41.3
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.7e-21 105.5 116 56.0
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 2.0e-20 104.0 298 32.2
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 2.0e-20 104.0 267 35.6
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 5.7e-20 102.4 235 36.2
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 5.7e-20 102.4 278 36.0
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 9.7e-20 101.7 288 31.6
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 1.7e-19 100.9 80 70.0
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 8.2e-19 98.6 280 31.8
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 1.1e-18 98.2 82 68.3
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.4e-18 97.8 278 33.5
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 3.1e-18 96.7 262 35.5
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 5.3e-18 95.9 273 33.3
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 5.3e-18 95.9 261 33.7
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 7.0e-18 95.5 264 32.6
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 9.1e-18 95.1 82 64.6
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 1.2e-17 94.7 80 66.2
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 1.2e-17 94.7 274 32.1
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 4.5e-17 92.8 97 57.7
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 7.7e-17 92.0 145 44.8
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 7.7e-17 92.0 76 68.4
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 7.7e-17 92.0 279 33.0
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 2.2e-16 90.5 76 67.1
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 3.8e-16 89.7 78 65.4
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 6.5e-16 89.0 262 29.4
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 8.5e-16 88.6 266 35.0
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 8.5e-16 88.6 129 48.8
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.5e-15 87.8 69 71.0
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 1.5e-15 87.8 193 35.8
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 2.5e-15 87.0 72 66.7
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.5e-15 87.0 251 35.9
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 3.2e-15 86.7 76 64.5
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.2e-15 86.7 77 63.6
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.2e-14 84.7 136 43.4
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.1e-14 84.0 269 32.0
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 3.6e-14 83.2 257 32.3
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 1.4e-13 81.3 253 30.4
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 1.8e-13 80.9 279 30.8
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.3e-13 80.5 134 43.3
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.0e-13 80.1 266 33.1
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 5.2e-13 79.3 252 29.4
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.5e-12 77.8 268 30.2
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.5e-12 77.8 68 66.2
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 2.6e-12 77.0 286 31.1
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 5.7e-12 75.9 257 29.2
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 7.5e-12 75.5 250 31.6
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 1.7e-11 74.3 190 35.8
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 2.2e-11 73.9 273 31.9
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 8.3e-11 72.0 256 30.1
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 1.1e-10 71.6 323 25.7
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.4e-10 71.2 120 44.2
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 1.8e-10 70.9 55 70.9
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.8e-10 70.9 65 61.5
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.8e-10 70.9 178 32.0
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 4.1e-10 69.7 201 32.8
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 5.3e-10 69.3 92 43.5
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 7.0e-10 68.9 240 29.6
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.6e-09 67.8 66 56.1
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.6e-09 67.8 77 49.4
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.7e-09 67.0 201 32.3
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 5.9e-09 65.9 234 29.1
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 7.7e-09 65.5 88 46.6
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.0e-08 65.1 79 49.4
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.9e-08 63.5 71 49.3
ATR0174G047 Amborella trichopoda HOM05D003937 ORTHO05D004583 3.8e-08 63.2 192 32.3
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 2.5e-07 60.5 74 47.3
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 9.4e-07 58.5 155 34.8


User provided reference genes

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