Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 1.2e-62 243.0 128 100.0
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 5.5e-31 137.9 128 63.3
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 6.1e-30 134.4 99 66.7
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 5.1e-29 131.3 128 58.6
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 9.7e-28 127.1 100 64.0
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 1.3e-27 126.7 104 61.5
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 3.1e-26 122.1 110 60.9
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 4.1e-26 121.7 110 60.9
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.1e-26 121.7 110 60.9
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 9.1e-26 120.6 105 61.9
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 2.0e-25 119.4 101 64.4
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 3.5e-25 118.6 128 60.9
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 3.5e-25 118.6 128 60.9
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 3.5e-25 118.6 128 53.9
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 5.5e-23 111.3 100 63.0
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 4.7e-22 108.2 128 53.9
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 2.0e-20 102.8 128 48.4
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 5.7e-20 101.3 94 55.3
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 7.4e-20 100.9 133 46.6
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.2e-19 99.4 130 49.2
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 2.2e-19 99.4 113 50.4
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 6.3e-19 97.8 125 48.8
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 1.4e-18 96.7 129 48.1
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 2.4e-18 95.9 113 49.6
Gorai.005G255300 Gossypium raimondii HOM05D007970 ORTHO05D009943 4.1e-18 95.1 144 45.1
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 7.0e-18 94.4 103 52.4
Gohir.D02G227400 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.2e-17 93.6 144 44.4
Gohir.A03G206000 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.6e-17 93.2 142 43.7
QL11p052437 Quercus lobata HOM05D007970 ORTHO05D009943 4.5e-17 91.7 116 49.1
CANSAT25G3784 Cannabis sativa HOM05D007970 ORTHO05D009943 7.7e-17 90.9 106 49.1
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 3.8e-16 88.6 107 46.7
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 1.9e-15 86.3 104 50.0
CSS0030284 Camellia sinensis var. sinensis HOM05D007970 ORTHO05D009943 6.1e-14 81.3 114 48.2
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 8.0e-14 80.9 103 46.6
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 6.8e-13 77.8 110 42.7
Nitab4.5_0013642g0020 Nicotiana tabacum HOM05D007970 ORTHO05D009943 6.8e-13 77.8 76 51.3
Oeu015553.1 Olea europaea HOM05D007970 ORTHO05D009943 8.8e-13 77.4 109 45.9
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 3.4e-12 75.5 98 45.9
vmacro17329 Vaccinium macrocarpon HOM05D007970 ORTHO05D009943 3.4e-12 75.5 100 48.0
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 7.5e-12 74.3 130 40.8
Gohir.D01G161700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 9.8e-12 73.9 131 43.5
Gorai.002G200600 Gossypium raimondii HOM05D007970 ORTHO05D009943 9.8e-12 73.9 131 43.5
CAN.G588.103 Capsicum annuum HOM05D007970 ORTHO05D009943 1.7e-11 73.2 85 47.1
Rhsim05G0052900 Rhododendron simsii HOM05D007970 ORTHO05D009943 2.2e-11 72.8 99 47.5
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 2.8e-11 72.4 108 43.5
Peaxi162Scf00362g00411 Petunia axillaris HOM05D007970 ORTHO05D009943 1.4e-10 70.1 111 38.7
PGSC0003DMG400018628 Solanum tuberosum HOM05D007970 ORTHO05D009943 2.4e-10 69.3 54 61.1
Sopen01g053860 Solanum pennellii HOM05D007970 ORTHO05D009943 3.1e-10 68.9 112 40.2
Nitab4.5_0000079g0240 Nicotiana tabacum HOM05D007970 ORTHO05D009943 9.1e-10 67.4 62 53.2
Peaxi162Scf00078g00137 Petunia axillaris HOM05D007970 ORTHO05D009943 9.1e-10 67.4 62 53.2
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 1.2e-09 67.0 114 42.1
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 1.2e-09 67.0 114 42.1
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 1.6e-09 66.6 115 39.1
Solyc01g111820.2 Solanum lycopersicum HOM05D007970 ORTHO05D009943 1.6e-09 66.6 54 59.3
Oeu045100.1 Olea europaea HOM05D007970 ORTHO05D009943 5.9e-09 64.7 62 56.5
Actinidia20529 Actinidia chinensis HOM05D007970 ORTHO05D009943 7.7e-09 64.3 78 47.4
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.0e-08 63.9 103 41.7
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 1.3e-08 63.5 58 60.3
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 1.3e-08 63.5 81 46.9
SGA_v2.0_scaffold32G13308 Striga asiatica HOM05D007970 ORTHO05D009943 1.3e-08 63.5 102 41.2
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 1.7e-08 63.2 57 56.1
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 2.2e-08 62.8 72 51.4
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 2.2e-08 62.8 103 41.7
Lsat_1_v5_gn_4_72040 Lactuca sativa HOM05D007970 ORTHO05D009943 2.9e-08 62.4 71 52.1
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.9e-08 62.4 68 52.9
Rhsim11G0193700 Rhododendron simsii HOM05D007970 ORTHO05D009943 2.9e-08 62.4 81 44.4
ClCG02G012110 Citrullus lanatus HOM05D007970 ORTHO05D009943 3.8e-08 62.0 89 42.7
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 5.0e-08 61.6 70 48.6
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 6.5e-08 61.2 51 70.6
MELO3C034691.2 Cucumis melo HOM05D007970 ORTHO05D009943 6.5e-08 61.2 89 44.9
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 8.5e-08 60.8 78 46.2
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 1.1e-07 60.5 88 40.9
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 1.5e-07 60.1 84 45.2
Medtr1g112960 Medicago truncatula HOM05D007970 ORTHO05D009943 1.9e-07 59.7 77 48.1
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 2.5e-07 59.3 53 62.3
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 2.5e-07 59.3 64 56.2
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 3.2e-07 58.9 53 60.4
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 3.2e-07 58.9 92 45.7
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 3.2e-07 58.9 106 35.8
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 3.2e-07 58.9 107 37.4
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 3.2e-07 58.9 102 37.3
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 4.2e-07 58.5 55 61.8
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 5.5e-07 58.2 55 61.8
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 5.5e-07 58.2 57 57.9
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 5.5e-07 58.2 57 57.9
Sc18g0006290 Simmondsia chinensis HOM05D007970 ORTHO05D009943 7.2e-07 57.8 64 46.9
SGA_v2.0_scaffold195G40813 Striga asiatica HOM05D007970 ORTHO05D009943 7.2e-07 57.8 83 44.6
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 9.4e-07 57.4 57 59.6
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 9.4e-07 57.4 57 59.6
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 9.4e-07 57.4 93 43.0
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 9.4e-07 57.4 65 50.8
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.2e-06 57.0 69 46.4
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 1.2e-06 57.0 62 53.2
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 1.2e-06 57.0 56 51.8
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 1.6e-06 56.6 69 46.4
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 1.6e-06 56.6 92 41.3
Migut.N01333 Erythranthe guttata HOM05D007970 ORTHO05D009943 2.1e-06 56.2 75 46.7
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 2.1e-06 56.2 69 47.8
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 3.6e-06 55.5 69 44.9
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 4.7e-06 55.1 67 53.7
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 4.7e-06 55.1 55 61.8
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 4.7e-06 55.1 56 51.8
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 4.7e-06 55.1 78 41.0
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 4.7e-06 55.1 51 64.7
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 4.7e-06 55.1 51 66.7
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 4.7e-06 55.1 68 54.4
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 4.7e-06 55.1 57 56.1
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 4.7e-06 55.1 69 44.9
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 4.7e-06 55.1 69 44.9
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 6.1e-06 54.7 51 64.7
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 6.1e-06 54.7 51 64.7
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 6.1e-06 54.7 51 64.7
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 6.1e-06 54.7 51 64.7
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 6.1e-06 54.7 55 56.4
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 8.0e-06 54.3 56 55.4
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 8.0e-06 54.3 53 56.6
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 8.0e-06 54.3 52 63.5
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 8.0e-06 54.3 59 52.5
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 8.0e-06 54.3 69 44.9
TPR.G2416 Trifolium pratense HOM05D062211 ORTHO05D009943 8.0e-06 54.3 125 34.4


User provided reference genes

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