Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 5.9e-129 464.2 227 100.0
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 7.1e-82 307.8 172 85.5
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.7e-81 305.8 172 87.2
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 6.0e-81 304.7 172 84.3
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 7.9e-81 304.3 172 84.3
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.7e-80 300.8 172 83.1
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 4.3e-79 298.5 175 81.1
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 4.3e-79 298.5 172 83.7
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 7.4e-79 297.7 172 83.1
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 9.6e-79 297.4 172 82.0
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 4.8e-78 295.0 175 81.1
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.4e-77 292.7 172 83.1
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.4e-77 292.7 175 80.0
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 4.0e-77 292.0 175 79.4
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 6.9e-77 291.2 175 80.6
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.2e-76 290.4 172 82.0
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.2e-76 290.4 172 81.4
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.0e-76 289.7 171 81.9
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 3.4e-76 288.9 175 78.3
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 4.5e-76 288.5 175 78.9
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 5.8e-76 288.1 175 77.7
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.8e-76 288.1 172 80.2
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 5.8e-76 288.1 175 79.4
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.0e-75 287.3 172 80.2
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.0e-75 287.3 175 77.1
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.3e-75 287.0 175 78.3
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.3e-75 287.0 172 80.2
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.3e-75 287.0 172 80.2
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.7e-75 286.6 175 77.1
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.7e-75 286.6 175 77.1
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 2.2e-75 286.2 175 77.1
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 2.2e-75 286.2 175 77.1
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 2.9e-75 285.8 175 77.1
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 2.9e-75 285.8 169 81.1
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 3.8e-75 285.4 175 78.9
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 6.5e-75 284.6 172 79.1
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 6.5e-75 284.6 172 79.7
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 6.5e-75 284.6 172 78.5
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.1e-74 283.9 175 78.9
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-74 283.9 169 79.9
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.1e-74 283.9 175 77.1
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-74 283.9 175 77.1
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.1e-74 283.9 169 79.9
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 3.2e-74 282.3 175 76.0
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 4.2e-74 282.0 172 79.7
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 4.2e-74 282.0 171 77.8
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 5.5e-74 281.6 172 79.1
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 7.1e-74 281.2 172 77.3
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.6e-73 280.0 170 78.2
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.6e-73 280.0 169 78.7
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 3.5e-73 278.9 172 77.3
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.5e-73 278.9 170 78.8
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 7.9e-73 277.7 172 77.9
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.0e-72 277.3 172 76.2
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.0e-72 277.3 163 80.4
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.8e-72 276.6 174 76.4
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.8e-72 276.6 175 76.0
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.3e-72 276.2 172 76.7
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 3.0e-72 275.8 172 75.6
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.0e-72 275.8 172 77.3
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.0e-72 275.8 172 77.3
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 3.0e-72 275.8 174 78.7
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 3.0e-72 275.8 173 76.9
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 3.0e-72 275.8 175 76.0
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 3.0e-72 275.8 175 76.0
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 3.9e-72 275.4 175 75.4
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 8.7e-72 274.2 171 77.2
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.1e-71 273.9 169 77.5
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.9e-71 273.1 166 80.7
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.3e-71 272.3 172 76.7
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 7.4e-71 271.2 175 74.3
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 7.4e-71 271.2 171 76.0
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 7.4e-71 271.2 175 75.4
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.3e-70 270.4 171 76.0
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 4.8e-70 268.5 170 75.3
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 8.2e-70 267.7 172 77.9
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.1e-69 267.3 169 78.7
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.1e-69 267.3 172 75.6
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.8e-69 266.5 174 73.6
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 4.1e-69 265.4 156 83.3
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.1e-69 265.4 172 73.8
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.9e-69 264.6 172 73.3
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.5e-68 263.5 168 75.0
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 3.4e-68 262.3 169 73.4
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 5.8e-68 261.5 168 76.2
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 5.8e-68 261.5 172 71.5
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.2e-67 259.6 171 70.2
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 6.5e-67 258.1 170 72.9
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 6.5e-67 258.1 171 74.3
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 8.4e-67 257.7 162 76.5
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.1e-66 257.3 193 65.8
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.1e-66 257.3 170 70.6
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.9e-66 256.5 175 70.3
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.9e-66 256.5 165 74.5
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.9e-66 256.5 165 72.1
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 3.2e-66 255.8 170 72.9
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 7.1e-66 254.6 172 72.7
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 7.1e-66 254.6 168 71.4
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 9.3e-66 254.2 172 70.3
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 9.3e-66 254.2 172 71.5
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 9.3e-66 254.2 169 68.6
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.6e-65 253.4 172 70.3
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 4.6e-65 251.9 171 70.2
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.0e-64 250.8 172 65.7
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.3e-64 250.4 175 71.4
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.1e-63 247.3 169 68.0
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.1e-63 247.3 172 68.0
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.5e-63 246.1 168 69.6
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 3.3e-63 245.7 158 73.4
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 3.3e-63 245.7 167 71.9
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 3.3e-63 245.7 163 69.9
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 7.4e-63 244.6 170 68.8
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 6.3e-62 241.5 164 72.0
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.1e-61 240.7 165 70.9
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-61 240.4 168 68.5
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-61 240.4 168 68.5
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.4e-61 240.4 172 66.9
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.8e-61 240.0 173 67.1
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 3.1e-61 239.2 183 62.8
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.1e-61 239.2 170 70.0
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 9.0e-61 237.7 160 71.9
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 4.5e-60 235.3 160 70.0
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.0e-59 234.2 165 67.9
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.0e-59 234.2 168 66.7
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 5.0e-59 231.9 159 69.8
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 8.5e-59 231.1 134 78.4
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 8.5e-59 231.1 175 66.3
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.9e-58 229.9 160 66.9
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 3.2e-58 229.2 168 64.9
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.6e-57 225.3 162 69.8
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 6.1e-57 224.9 159 66.7
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 3.0e-56 222.6 169 66.9
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.0e-56 222.6 169 66.9
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-55 220.3 162 68.5
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.5e-55 219.5 173 60.1
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 5.7e-55 218.4 175 64.0
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 9.7e-55 217.6 160 63.8
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 2.8e-54 216.1 134 74.6
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.7e-54 215.7 141 73.8
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 8.2e-54 214.5 159 64.2
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-53 213.8 176 64.2
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 4.1e-53 212.2 160 63.8
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 9.1e-53 211.1 163 66.9
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.2e-52 210.7 160 64.4
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 2.0e-52 209.9 161 59.0
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 5.0e-51 205.3 160 60.0
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 2.5e-50 203.0 161 66.5
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.5e-50 201.8 139 73.4
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.7e-49 199.5 155 61.3
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 8.8e-48 194.5 129 75.2
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.1e-47 194.1 164 56.1
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.5e-47 193.7 146 65.8
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.3e-46 190.7 175 57.1
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.0e-44 183.3 128 71.1
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 4.5e-44 182.2 157 54.8
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.3e-43 180.6 162 60.5
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.7e-43 180.3 173 55.5
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 7.2e-42 174.9 128 67.2
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.4e-40 170.6 169 54.4
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.8e-40 170.2 159 54.1
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.0e-40 169.1 169 53.8
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.6e-39 166.4 125 64.8
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.0e-36 156.8 116 69.0
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.5e-34 149.8 97 73.2
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.4e-32 144.1 90 75.6
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.2e-31 141.0 169 49.7
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.3e-30 137.5 148 45.3
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 3.1e-29 132.9 94 64.9
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 9.1e-29 131.3 91 65.9
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.9e-27 126.3 89 67.4
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 2.7e-25 119.8 73 74.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.0e-17 91.7 52 86.5
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.2e-16 89.0 79 55.7
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.3e-11 73.6 107 40.2
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-11 73.2 52 65.4
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 1.5e-10 70.9 79 48.1
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 8.0e-09 65.1 106 34.0
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.2e-08 62.4 36 72.2
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 6.8e-08 62.0 36 72.2
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.5e-07 60.8 183 28.4
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 1.5e-07 60.8 32 84.4
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.5e-07 60.8 32 84.4
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.3e-06 57.8 61 39.3
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 4.9e-06 55.8 32 78.1
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 6.4e-06 55.5 36 63.9


User provided reference genes

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