Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.8 Carica papaya HOM05D007403 ORTHO05D009306 1.4e-69 266.2 134 100.0
COL.COLO4_17887 Corchorus olitorius HOM05D007403 ORTHO05D009306 4.9e-22 108.2 72 76.4
Carub.0006s2260 Capsella rubella HOM05D007403 ORTHO05D009306 2.7e-20 102.4 70 68.6
RcHm_v2.0_Chr7g0224451 Rosa chinensis HOM05D007403 ORTHO05D009306 1.7e-19 99.8 75 65.3
Thecc.02G040500 Theobroma cacao HOM05D007403 ORTHO05D009306 2.3e-19 99.4 72 68.1
AT5G24750 Arabidopsis thaliana HOM05D007403 ORTHO05D009306 8.6e-19 97.4 73 63.0
Prupe.1G562100 Prunus persica HOM05D007403 ORTHO05D009306 8.6e-19 97.4 72 68.1
Potri.003G021100 Populus trichocarpa HOM05D007403 ORTHO05D009306 1.1e-18 97.1 69 68.1
GSVIVG01023003001 Vitis vinifera HOM05D007403 ORTHO05D009306 1.1e-18 97.1 75 64.0
Duzib132G0321 Durio zibethinus HOM05D007403 ORTHO05D009306 1.5e-18 96.7 72 69.4
TAR381G0205 Trochodendron aralioides HOM05D007403 ORTHO05D009306 1.5e-18 96.7 71 67.6
AL6G36340 Arabidopsis lyrata HOM05D007403 ORTHO05D009306 3.3e-18 95.5 73 61.6
CARHR188740 Cardamine hirsuta HOM05D007403 ORTHO05D009306 3.3e-18 95.5 70 61.4
CiPaw.05G043100 Carya illinoinensis HOM05D007403 ORTHO05D009306 3.3e-18 95.5 75 62.7
Gohir.A12G032700 Gossypium hirsutum HOM05D007403 ORTHO05D009306 3.3e-18 95.5 72 65.3
MD08G1224800 Malus domestica HOM05D007403 ORTHO05D009306 3.3e-18 95.5 72 68.1
CSS0033747 Camellia sinensis var. sinensis HOM05D007403 ORTHO05D009306 4.3e-18 95.1 75 62.7
Thhalv10004004m.g Eutrema salsugineum HOM05D007403 ORTHO05D009306 4.3e-18 95.1 73 63.0
Gohir.D12G039900 Gossypium hirsutum HOM05D007403 ORTHO05D009306 5.6e-18 94.7 72 63.9
Gorai.008G041600 Gossypium raimondii HOM05D007403 ORTHO05D009306 5.6e-18 94.7 72 63.9
QL02p043717 Quercus lobata HOM05D002263 ORTHO05D012916 5.6e-18 94.7 75 64.0
Sabra03G0012400 Salix brachista HOM05D007403 ORTHO05D009306 5.6e-18 94.7 69 68.1
Sp2g22680 Schrenkiella parvula HOM05D007403 ORTHO05D009306 9.5e-18 94.0 73 61.6
CSS0040815 Camellia sinensis var. sinensis HOM05D007403 ORTHO05D009306 1.6e-17 93.2 75 61.3
Ciclev10000975m.g Citrus clementina HOM05D007403 ORTHO05D009306 2.1e-17 92.8 72 62.5
FvH4_5g30191 Fragaria vesca HOM05D007403 ORTHO05D009306 2.8e-17 92.4 72 65.3
FAN18G2174 Fragaria x ananassa HOM05D007403 ORTHO05D009306 2.8e-17 92.4 72 65.3
Lj5A250G19 Lonicera japonica HOM05D007403 ORTHO05D009306 6.2e-17 91.3 72 68.1
Atru.chr6.1105 Acer truncatum HOM05D007403 ORTHO05D009306 8.1e-17 90.9 72 63.9
Migut.B00669 Erythranthe guttata HOM05D007403 ORTHO05D009306 8.1e-17 90.9 74 59.5
QL02p098561 Quercus lobata HOM05D007403 ORTHO05D009306 8.1e-17 90.9 75 61.3
Dinv19355 Davidia involucrata HOM05D007403 ORTHO05D009306 1.1e-16 90.5 75 64.0
Aa31LG11G3980 Aethionema arabicum HOM05D007403 ORTHO05D009306 1.8e-16 89.7 73 57.5
HanXRQChr11g0338411 Helianthus annuus HOM05D007403 ORTHO05D009306 3.1e-16 89.0 72 59.7
Hma1.2p1_0557F.1_g178360 Hydrangea macrophylla HOM05D007403 ORTHO05D009306 4.0e-16 88.6 75 62.7
SGA_v2.0_scaffold1G00325 Striga asiatica HOM05D007403 ORTHO05D009306 4.0e-16 88.6 72 63.9
BcaB07g29919 Brassica carinata HOM05D007403 ORTHO05D009306 6.8e-16 87.8 70 54.3
FAN04G0335 Fragaria x ananassa HOM05D007403 ORTHO05D009306 6.8e-16 87.8 75 60.0
Nn5g28844 Nelumbo nucifera HOM05D007403 ORTHO05D009306 6.8e-16 87.8 72 61.1
THA.LOC104798998 Tarenaya hassleriana HOM05D007403 ORTHO05D009306 6.8e-16 87.8 70 57.1
MBI04_g33335_MAGBIO Magnolia biondii HOM05D007403 ORTHO05D009306 3.4e-15 85.5 74 62.2
Hma1.2p1_0557F.1_g178350 Hydrangea macrophylla HOM05D007403 ORTHO05D009306 5.8e-15 84.7 73 61.6
A02p40120 Brassica napus HOM05D000219 ORTHO05D009306 9.9e-15 84.0 70 52.9
BraA02t08979Z Brassica rapa HOM05D007403 ORTHO05D009306 9.9e-15 84.0 70 52.9
Lalb_Chr18g0060841 Lupinus albus HOM05D007403 ORTHO05D009306 9.9e-15 84.0 70 55.7
Manes.10G131400 Manihot esculenta HOM05D007403 ORTHO05D009306 9.9e-15 84.0 69 53.6
Solyc01g104410.4 Solanum lycopersicum HOM05D007403 ORTHO05D009306 9.9e-15 84.0 72 58.3
Cc02_g22320 Coffea canephora HOM05D007403 ORTHO05D009306 1.3e-14 83.6 72 54.2
vmacro01773 Vaccinium macrocarpon HOM05D007403 ORTHO05D009306 1.3e-14 83.6 72 56.9
FAN08G0644 Fragaria x ananassa HOM05D007403 ORTHO05D009306 1.7e-14 83.2 72 61.1
Lj6g0017074 Lotus japonicus HOM05D007403 ORTHO05D009306 1.7e-14 83.2 70 55.7
Peaxi162Scf00011g00136 Petunia axillaris HOM05D007403 ORTHO05D009306 2.2e-14 82.8 72 58.3
Nitab4.5_0006604g0010 Nicotiana tabacum HOM05D007403 ORTHO05D009306 2.9e-14 82.4 75 57.3
SalBow5G2609 Salvia bowleyana HOM05D007403 ORTHO05D009306 2.9e-14 82.4 75 54.7
TWI59G1473 Tripterygium wilfordii HOM05D007403 ORTHO05D009306 2.9e-14 82.4 85 51.8
Rhsim11G0131100 Rhododendron simsii HOM05D007403 ORTHO05D009306 3.7e-14 82.0 72 58.3
PGSC0003DMG400023750 Solanum tuberosum HOM05D007403 ORTHO05D009306 4.9e-14 81.6 72 58.3
Glyma.08G184700 Glycine max HOM05D007403 ORTHO05D009306 6.4e-14 81.3 70 55.7
Sopen01g046850 Solanum pennellii HOM05D007403 ORTHO05D009306 8.4e-14 80.9 72 55.6
Ah.12g064270 Amaranthus hybridus HOM05D007403 ORTHO05D009306 1.1e-13 80.5 72 54.2
Phvul.006G212700 Phaseolus vulgaris HOM05D007403 ORTHO05D009306 1.4e-13 80.1 70 54.3
Eucgr.G00612 Eucalyptus grandis HOM05D007403 ORTHO05D009306 1.9e-13 79.7 72 55.6
Aqoxy5G02020 Aquilegia oxysepala HOM05D007403 ORTHO05D009306 2.4e-13 79.3 70 55.7
BcaC03g17949 Brassica carinata HOM05D000219 ORTHO05D009306 4.1e-13 78.6 70 51.4
BolC2t12064H Brassica oleracea HOM05D007403 ORTHO05D009306 4.1e-13 78.6 70 51.4
Medtr2g043740 Medicago truncatula HOM05D007403 ORTHO05D009306 4.1e-13 78.6 70 50.0
Nitab4.5_0011920g0020 Nicotiana tabacum HOM05D007403 ORTHO05D009306 4.1e-13 78.6 75 54.7
Psat1g137240 Pisum sativum HOM05D007403 ORTHO05D009306 4.1e-13 78.6 68 50.0
C02p60090 Brassica napus HOM05D000219 ORTHO05D009306 7.1e-13 77.8 70 50.0
CAN.G1305.34 Capsicum annuum HOM05D007403 ORTHO05D009306 7.1e-13 77.8 72 55.6
AUR62024767 Chenopodium quinoa HOM05D007403 ORTHO05D009306 9.2e-13 77.4 73 54.8
VMungo0540G0348 Vigna mungo HOM05D007403 ORTHO05D009306 1.2e-12 77.0 70 51.4
CANSAT11G1055 Cannabis sativa HOM05D007403 ORTHO05D009306 3.5e-12 75.5 72 54.2
Lsat_1_v5_gn_7_77881 Lactuca sativa HOM05D007403 ORTHO05D009306 4.6e-12 75.1 53 64.2
HPP92_020049 Vanilla planifolia HOM05D007403 ORTHO05D009306 1.0e-11 73.9 73 49.3
Ah.12g060250 Amaranthus hybridus HOM05D007403 ORTHO05D009306 3.0e-11 72.4 71 52.1
ATR1120G172 Amborella trichopoda HOM05D007403 ORTHO05D009306 3.9e-11 72.0 71 50.7
AUR62037684 Chenopodium quinoa HOM05D007403 ORTHO05D009306 5.1e-11 71.6 73 52.1
PSO210G5116 Papaver somniferum HOM05D007403 ORTHO05D009306 6.6e-11 71.2 71 50.7
unitig_27.g24942 Utricularia gibba HOM05D007403 ORTHO05D009306 6.6e-11 71.2 71 47.9
TPR.G15151 Trifolium pratense HOM05D007403 ORTHO05D009306 1.1e-10 70.5 70 48.6
EL10Ac2g02449 Beta vulgaris HOM05D007403 ORTHO05D009306 4.7e-09 65.1 70 48.6
DCAR_001817 Daucus carota HOM05D007403 ORTHO05D009306 5.2e-08 61.6 51 62.7
PSO170G1442 Papaver somniferum HOM05D002224 ORTHO05D002446 1.7e-06 56.6 50 52.0
SEGI_38556 Sequoiadendron giganteum HOM05D007403 ORTHO05D009306 8.4e-06 54.3 83 34.9


User provided reference genes

Program Settings