Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 5.0e-51 204.1 102 100.0
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 2.0e-44 182.2 103 89.3
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 2.6e-44 181.8 103 89.3
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 5.9e-44 180.6 104 86.5
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 2.2e-43 178.7 101 88.1
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 3.8e-43 177.9 104 87.5
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 6.5e-43 177.2 103 87.4
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 6.5e-43 177.2 103 87.4
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 6.5e-43 177.2 103 87.4
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 6.5e-43 177.2 103 88.3
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 1.5e-42 176.0 103 86.4
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 1.5e-42 176.0 103 86.4
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 1.9e-42 175.6 104 86.5
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 86.4
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 86.4
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 86.4
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 86.4
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 86.4
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 87.4
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 86.4
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 87.4
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 87.4
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 86.4
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 2.5e-42 175.3 102 86.3
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 2.5e-42 175.3 104 84.6
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 3.2e-42 174.9 103 87.4
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 4.2e-42 174.5 103 85.4
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 4.2e-42 174.5 103 85.4
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 4.2e-42 174.5 101 86.1
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 5.5e-42 174.1 103 87.4
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 5.5e-42 174.1 102 85.3
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 5.5e-42 174.1 103 87.4
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 5.5e-42 174.1 104 83.7
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 9.4e-42 173.3 102 86.3
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 9.4e-42 173.3 102 87.3
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 9.4e-42 173.3 103 86.4
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 1.2e-41 172.9 102 84.3
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 1.6e-41 172.6 103 84.5
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 3.6e-41 171.4 102 85.3
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 3.6e-41 171.4 103 84.5
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 6.1e-41 170.6 102 84.3
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 6.1e-41 170.6 102 82.4
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 6.1e-41 170.6 105 85.7
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 8.0e-41 170.2 103 84.5
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 8.0e-41 170.2 102 82.4
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 8.0e-41 170.2 102 83.3
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 1.0e-40 169.9 103 83.5
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 1.4e-40 169.5 103 83.5
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 1.8e-40 169.1 103 84.5
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.8e-40 169.1 102 84.3
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 2.3e-40 168.7 103 82.5
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 4.0e-40 167.9 102 85.3
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 4.0e-40 167.9 102 82.4
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 5.2e-40 167.5 102 83.3
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 5.2e-40 167.5 102 83.3
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 8.8e-40 166.8 104 82.7
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 8.8e-40 166.8 105 81.9
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 8.8e-40 166.8 101 80.2
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 1.2e-39 166.4 102 84.3
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.2e-39 166.4 103 83.5
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 1.5e-39 166.0 101 82.2
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 1.5e-39 166.0 101 82.2
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 1.5e-39 166.0 107 80.4
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.5e-39 166.0 105 81.0
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 1.5e-39 166.0 102 84.3
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 2.0e-39 165.6 102 84.3
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 2.0e-39 165.6 103 80.6
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 2.6e-39 165.2 103 81.6
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.6e-39 165.2 103 81.6
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.6e-39 165.2 103 81.6
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 3.3e-39 164.9 103 82.5
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 3.3e-39 164.9 106 82.1
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 3.3e-39 164.9 101 79.2
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 3.3e-39 164.9 101 79.2
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 3.3e-39 164.9 102 82.4
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 4.4e-39 164.5 103 81.6
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 4.4e-39 164.5 103 83.5
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 9.7e-39 163.3 104 81.7
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 9.7e-39 163.3 103 78.6
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 1.7e-38 162.5 102 78.4
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 2.2e-38 162.2 102 80.4
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 2.2e-38 162.2 100 80.0
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 3.7e-38 161.4 102 79.4
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 3.7e-38 161.4 105 78.1
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 3.7e-38 161.4 98 84.7
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 3.7e-38 161.4 102 80.4
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 8.2e-38 160.2 102 77.5
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 1.4e-37 159.5 103 79.6
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 1.4e-37 159.5 107 81.3
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 1.8e-37 159.1 102 79.4
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 1.8e-37 159.1 103 78.6
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 1.8e-37 159.1 105 79.0
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 2.4e-37 158.7 105 78.1
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 3.1e-37 158.3 85 91.8
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 3.1e-37 158.3 102 78.4
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 7.0e-37 157.1 85 90.6
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 7.0e-37 157.1 85 90.6
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 1.6e-36 156.0 102 78.4
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 2.7e-36 155.2 102 79.4
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 4.5e-36 154.5 106 74.5
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 4.5e-36 154.5 106 74.5
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 4.5e-36 154.5 104 77.9
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 5.9e-36 154.1 106 74.5
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 5.9e-36 154.1 106 74.5
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 7.7e-36 153.7 101 76.2
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.3e-35 152.9 106 73.6
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 5.0e-35 151.0 105 77.1
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 1.9e-34 149.1 82 86.6
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 7.2e-34 147.1 93 81.7
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 9.4e-34 146.7 93 78.5
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 1.2e-33 146.4 102 74.5
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 1.6e-33 146.0 97 72.2
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 1.0e-32 143.3 98 74.5
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 1.0e-32 143.3 96 77.1
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 2.3e-32 142.1 93 76.3
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 3.0e-32 141.7 73 91.8
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 3.4e-31 138.3 99 72.7
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 2.4e-29 132.1 84 75.0
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 1.2e-28 129.8 88 73.9
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 5.9e-28 127.5 69 85.5
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 1.0e-27 126.7 73 80.8
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 2.9e-27 125.2 85 72.9
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 2.3e-24 115.5 88 64.8
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.5e-23 112.8 74 68.9
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 3.4e-23 111.7 81 65.4
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 7.8e-20 100.5 68 75.0
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 7.8e-20 100.5 68 75.0
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 1.0e-19 100.1 56 83.9
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 3.8e-19 98.2 70 61.4
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 5.0e-19 97.8 103 59.2
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 7.3e-18 94.0 78 53.8
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 9.5e-18 93.6 87 62.1
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 1.0e-16 90.1 55 67.3
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 3.0e-16 88.6 65 58.5
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 6.4e-14 80.9 103 52.4
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 2.3e-08 62.4 67 47.8


User provided reference genes

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