Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.70 Carica papaya HOM05D003290 ORTHO05D003866 7.1e-113 410.6 208 100.0
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 2.4e-60 236.1 206 60.2
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 8.6e-58 227.6 208 61.1
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 1.5e-57 226.9 216 59.7
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 5.6e-57 224.9 206 60.7
Ciclev10015265m.g Citrus clementina HOM05D003290 ORTHO05D003866 6.1e-56 221.5 207 59.4
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 1.1e-52 210.7 206 57.8
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 5.4e-52 208.4 206 59.2
Haze_10794 Corylus avellana HOM05D003290 ORTHO05D003866 7.0e-52 208.0 206 58.7
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 1.0e-50 204.1 216 55.6
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 1.0e-50 204.1 205 56.1
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 1.3e-50 203.8 207 55.1
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 2.3e-50 203.0 199 60.3
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 3.9e-50 202.2 202 56.4
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 6.6e-50 201.4 224 53.6
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.9e-49 199.9 207 58.0
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 1.9e-49 199.9 203 57.6
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 2.5e-49 199.5 209 53.6
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 7.3e-49 198.0 207 54.1
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 1.2e-48 197.2 204 52.5
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 1.2e-48 197.2 206 56.3
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 1.6e-48 196.8 200 56.5
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 2.8e-48 196.1 210 55.7
TAR629G0420 Trochodendron aralioides HOM05D003290 ORTHO05D003866 2.8e-48 196.1 210 56.7
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 3.6e-48 195.7 217 52.1
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 3.6e-48 195.7 208 56.2
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 4.7e-48 195.3 207 54.6
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 1.4e-47 193.7 202 53.5
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 2.6e-46 189.5 208 52.9
Cc11_g05260 Coffea canephora HOM05D003290 ORTHO05D003866 3.4e-46 189.1 203 54.7
CiPaw.05G159900 Carya illinoinensis HOM05D003290 ORTHO05D003866 4.4e-46 188.7 203 55.7
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 4.4e-46 188.7 203 52.7
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 4.4e-46 188.7 210 53.8
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 7.5e-46 188.0 202 52.5
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 9.8e-46 187.6 203 53.2
vmacro10756 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 1.9e-44 183.3 209 54.1
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 4.1e-44 182.2 207 50.7
MD13G1014100 Malus domestica HOM05D003290 ORTHO05D003866 2.1e-43 179.9 222 50.0
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 2.7e-43 179.5 203 52.2
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 1.3e-42 177.2 212 52.8
DCAR_030317 Daucus carota HOM05D003290 ORTHO05D003866 1.3e-42 177.2 212 53.8
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 1.3e-42 177.2 217 50.7
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 2.3e-42 176.4 209 52.2
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 2.3e-42 176.4 212 51.4
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 5.1e-42 175.3 217 50.2
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 6.6e-42 174.9 217 50.2
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 1.1e-41 174.1 209 53.6
Nitab4.5_0001529g0040 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.1e-41 174.1 209 51.2
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 1.5e-41 173.7 206 50.5
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 1.5e-41 173.7 206 50.5
Sc03g0005960 Simmondsia chinensis HOM05D003290 ORTHO05D003866 4.3e-41 172.2 208 51.0
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 5.6e-41 171.8 206 50.0
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 5.6e-41 171.8 203 51.7
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 1.4e-39 167.2 219 48.9
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 1.8e-39 166.8 196 50.5
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 2.0e-38 163.3 209 48.8
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 2.6e-38 162.9 206 49.0
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 3.4e-38 162.5 187 51.3
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 9.9e-38 161.0 209 49.8
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 9.9e-38 161.0 207 50.7
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 1.7e-37 160.2 203 48.8
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 3.7e-37 159.1 209 48.3
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 6.4e-37 158.3 206 48.1
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 4.1e-36 155.6 202 46.5
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 4.1e-36 155.6 205 48.3
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 9.2e-36 154.5 203 47.8
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 1.2e-35 154.1 205 44.9
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 4.6e-35 152.1 209 49.8
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 7.8e-35 151.4 208 50.0
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 7.8e-35 151.4 208 50.0
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 5.1e-34 148.7 215 44.7
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 3.6e-32 142.5 195 47.2
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 2.4e-31 139.8 210 42.4
CAN.G282.93 Capsicum annuum HOM05D003290 ORTHO05D003866 6.8e-31 138.3 219 42.5
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 1.2e-30 137.5 207 45.4
Hma1.2p1_0068F.1_g037310 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 9.9e-30 134.4 197 46.2
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 2.4e-28 129.8 218 41.3
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 4.2e-28 129.0 203 41.9
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 5.4e-28 128.6 209 43.5
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 7.1e-28 128.3 206 43.7
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 9.2e-28 127.9 104 67.3
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 1.3e-26 124.0 206 42.7
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 3.9e-26 122.5 206 40.3
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 8.7e-26 121.3 103 59.2
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 1.5e-25 120.6 207 41.1
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 3.3e-25 119.4 102 59.8
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 4.3e-25 119.0 207 40.6
CARHR144580 Cardamine hirsuta HOM05D003290 ORTHO05D003866 1.6e-24 117.1 208 41.3
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 3.6e-24 115.9 207 39.1
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 4.7e-24 115.5 207 39.1
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 6.2e-24 115.2 207 39.1
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 8.1e-24 114.8 207 39.6
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 1.1e-23 114.4 203 41.4
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.1e-23 114.4 210 39.5
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 3.1e-23 112.8 207 39.1
CiPaw.05G160100 Carya illinoinensis HOM05D003290 ORTHO05D003866 1.7e-21 107.1 102 58.8
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 1.7e-21 107.1 225 37.8
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 2.9e-21 106.3 208 38.5
Potri.007G100500 Populus trichocarpa HOM05D003290 ORTHO05D003866 8.4e-21 104.8 102 59.8
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 2.4e-20 103.2 207 37.7
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 3.2e-20 102.8 195 39.0
Zm00001eb033240 Zea mays HOM05D003290 ORTHO05D003866 6.0e-19 98.6 221 34.4
SEGI_28338 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 3.0e-18 96.3 228 35.5
DCAR_030318 Daucus carota HOM05D003290 ORTHO05D003866 4.3e-17 92.4 106 47.2
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 5.6e-17 92.0 193 37.3
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 1.3e-16 90.9 204 35.8
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 3.6e-16 89.4 102 48.0
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 1.8e-15 87.0 201 34.8
CAN.G282.92 Capsicum annuum HOM05D003290 ORTHO05D003866 5.8e-14 82.0 130 42.3
MD16G1011200 Malus domestica HOM05D003290 ORTHO05D003866 1.1e-12 77.8 75 56.0
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 3.9e-10 69.3 96 43.8
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 1.5e-09 67.4 80 48.8
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 7.4e-09 65.1 229 29.7
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 4.0e-07 59.3 204 29.9
Ah.03g147340 Amaranthus hybridus HOM05D003290 ORTHO05D003866 4.5e-06 55.8 214 29.4


User provided reference genes

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