Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.68 Carica papaya HOM05D003290 ORTHO05D003866 6.8e-298 1026.5 515 100.0
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 2.6e-225 785.4 486 79.6
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.7e-224 782.7 486 79.2
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 8.5e-224 780.4 487 78.9
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 3.6e-222 775.0 486 79.6
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 4.7e-222 774.6 487 78.4
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 1.8e-221 772.7 486 78.4
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 5.2e-221 771.2 487 77.4
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 1.1e-220 770.0 486 77.8
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 1.5e-220 769.6 488 76.8
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 2.0e-220 769.2 486 78.2
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 4.4e-220 768.1 483 78.1
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 3.1e-218 761.9 482 78.4
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 2.6e-217 758.8 486 78.0
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 1.7e-216 756.1 486 76.5
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 2.5e-215 752.3 488 74.2
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 2.5e-215 752.3 539 71.1
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 3.2e-215 751.9 486 76.7
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 5.5e-215 751.1 485 77.1
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 6.1e-214 747.7 486 74.9
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 8.0e-214 747.3 486 75.9
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 1.4e-213 746.5 486 75.9
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 1.2e-212 743.4 486 75.3
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 1.2e-212 743.4 485 75.1
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 3.3e-212 741.9 487 74.5
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 3.3e-212 741.9 482 76.3
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 5.7e-212 741.1 487 74.5
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 2.2e-211 739.2 487 74.1
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 6.3e-211 737.6 486 73.9
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 1.4e-210 736.5 484 75.4
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 2.4e-210 735.7 486 75.5
TAR629G0420 Trochodendron aralioides HOM05D003290 ORTHO05D003866 2.7e-209 732.3 486 74.5
CiPaw.05G159900 Carya illinoinensis HOM05D003290 ORTHO05D003866 3.5e-209 731.9 487 74.9
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 3.5e-209 731.9 486 74.3
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 2.2e-208 729.2 486 73.7
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 3.8e-208 728.4 486 74.1
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 5.0e-208 728.0 487 74.1
Sc03g0005960 Simmondsia chinensis HOM05D003290 ORTHO05D003866 5.0e-208 728.0 486 72.4
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 2.1e-206 722.6 486 73.7
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 2.1e-206 722.6 486 73.7
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 2.1e-206 722.6 486 72.8
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 3.6e-206 721.8 486 73.7
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 4.7e-206 721.5 487 72.3
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 4.7e-206 721.5 488 74.2
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 1.8e-205 719.5 486 73.3
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 5.2e-205 718.0 485 72.4
Nitab4.5_0001529g0040 Nicotiana tabacum HOM05D003290 ORTHO05D003866 5.2e-205 718.0 487 71.0
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 1.2e-204 716.8 486 73.3
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 1.2e-204 716.8 486 71.8
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.5e-204 716.5 487 71.0
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 5.7e-204 714.5 489 72.0
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 7.5e-204 714.1 487 71.3
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 2.8e-203 712.2 488 70.9
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 8.3e-203 710.7 489 72.2
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 1.2e-201 706.8 486 72.6
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 1.6e-201 706.4 491 69.5
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 2.7e-201 705.7 485 70.3
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 3.5e-201 705.3 489 71.6
DCAR_030317 Daucus carota HOM05D003290 ORTHO05D003866 2.3e-200 702.6 476 71.8
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 2.3e-200 702.6 489 71.8
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 1.9e-199 699.5 487 69.4
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 3.3e-199 698.7 486 70.0
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 4.2e-199 698.4 487 69.2
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 7.2e-199 697.6 486 69.3
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 1.6e-198 696.4 487 69.2
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 8.0e-198 694.1 485 69.3
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 1.0e-197 693.7 515 67.6
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 4.0e-197 691.8 486 70.8
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 9.8e-196 687.2 486 70.2
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 2.8e-195 685.6 487 70.6
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 3.7e-195 685.3 486 69.5
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 4.1e-194 681.8 487 68.8
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 2.7e-193 679.1 484 69.6
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 1.7e-192 676.4 486 68.1
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 1.7e-192 676.4 495 69.5
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 2.3e-192 676.0 487 69.0
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 2.9e-192 675.6 484 69.8
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 3.8e-192 675.2 486 68.3
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 5.0e-192 674.9 486 67.9
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 6.6e-192 674.5 482 71.0
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 1.1e-191 673.7 486 67.7
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 1.1e-191 673.7 486 67.7
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 1.9e-191 672.9 486 67.7
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 2.5e-191 672.5 485 68.9
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 4.3e-191 671.8 486 67.5
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 3.6e-190 668.7 488 69.5
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 6.1e-190 667.9 487 68.8
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 1.0e-189 667.2 487 66.5
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 2.3e-189 666.0 485 66.8
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 2.3e-189 666.0 486 65.6
DCAR_030318 Daucus carota HOM05D003290 ORTHO05D003866 7.5e-188 661.0 486 66.3
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 3.7e-187 658.7 478 67.8
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 8.3e-187 657.5 485 66.4
Zm00001eb033240 Zea mays HOM05D003290 ORTHO05D003866 1.7e-184 649.8 495 65.5
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 1.8e-181 639.8 397 77.3
vmacro10756 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 5.2e-181 638.3 511 64.8
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 8.9e-181 637.5 503 62.4
CARHR144580 Cardamine hirsuta HOM05D003290 ORTHO05D003866 3.7e-179 632.1 487 65.1
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 3.7e-179 632.1 487 62.2
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 2.1e-177 626.3 487 63.4
Haze_10795 Corylus avellana HOM05D003290 ORTHO05D003866 4.7e-174 615.1 401 76.3
Cc11_g05260 Coffea canephora HOM05D003290 ORTHO05D003866 1.7e-168 596.7 408 72.1
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 1.2e-156 557.4 486 58.4
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 2.0e-148 530.0 480 59.6
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 1.1e-143 514.2 476 53.2
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 7.4e-143 511.5 480 53.1
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 7.4e-143 511.5 496 56.9
SMO367G0872 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 2.6e-140 503.1 474 52.3
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 4.2e-138 495.7 472 54.2
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 7.9e-137 491.5 486 52.7
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 2.3e-136 490.0 473 52.9
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 5.5e-130 468.8 478 50.4
CiPaw.05G160100 Carya illinoinensis HOM05D003290 ORTHO05D003866 3.0e-128 463.0 318 72.6
SMO367G0300 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 2.5e-127 459.9 477 49.1
Eucgr.B02635 Eucalyptus grandis HOM05D003290 ORTHO05D003866 2.3e-112 410.2 485 46.2
Peaxi162Scf00130g01216 Petunia axillaris HOM05D003290 ORTHO05D003866 2.4e-109 400.2 484 42.8
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 4.7e-105 386.0 282 66.7
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 8.0e-105 385.2 479 41.8
Nitab4.5_0009873g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.4e-104 384.4 483 43.9
Sp1g13040 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.8e-104 384.0 284 66.2
Carub.0001s1442 Capsella rubella HOM05D003290 ORTHO05D003866 8.8e-104 381.7 282 64.9
CAN.G282.93 Capsicum annuum HOM05D003290 ORTHO05D003866 8.8e-104 381.7 286 64.3
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 5.7e-103 379.0 285 65.3
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 5.7e-103 379.0 285 65.3
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 1.3e-102 377.9 281 65.8
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 3.7e-102 376.3 285 64.9
Solyc04g018100.4 Solanum lycopersicum HOM05D003290 ORTHO05D003866 3.7e-102 376.3 485 40.6
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 1.1e-101 374.8 383 52.0
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 1.1e-101 374.8 483 44.1
CARHR015150 Cardamine hirsuta HOM05D003290 ORTHO05D003866 7.0e-101 372.1 284 64.1
A06p10710 Brassica napus HOM05D003290 ORTHO05D003866 2.0e-100 370.5 285 63.9
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 7.7e-100 368.6 286 64.7
Ciclev10015265m.g Citrus clementina HOM05D003290 ORTHO05D003866 2.2e-99 367.1 240 75.8
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 3.8e-99 366.3 285 63.9
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.1e-98 364.8 282 63.5
Sp1g13030 Schrenkiella parvula HOM05D003290 ORTHO05D003866 3.6e-97 359.8 281 63.3
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 4.0e-96 356.3 284 63.7
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 6.3e-94 349.0 284 63.4
Dinv02702 Davidia involucrata HOM05D003290 ORTHO05D003866 4.5e-92 342.8 214 76.2
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 8.5e-91 338.6 422 43.4
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 2.8e-86 323.6 240 66.7
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 1.3e-83 314.7 275 61.5
Ca_18188_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 6.3e-78 295.8 175 81.1
Hma1.2p1_0068F.1_g037320 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 4.1e-77 293.1 218 65.6
SEGI_17003 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 2.3e-75 287.3 225 61.8
MD16G1011300 Malus domestica HOM05D003290 ORTHO05D003866 1.2e-65 255.0 173 71.1
arahy.Tifrunner.gnm1.ann1.DQT168 Arachis hypogaea HOM05D003290 ORTHO05D003866 6.8e-64 249.2 218 60.6
SEGI_13848 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 1.9e-61 241.1 194 62.9
Sopen04g009310 Solanum pennellii HOM05D003290 ORTHO05D003866 9.9e-55 218.8 271 39.1
MD16G1011400 Malus domestica HOM05D003290 ORTHO05D003866 5.4e-53 213.0 136 77.9
AL1G48790 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 2.3e-35 154.5 131 56.5
MD13G1014200 Malus domestica HOM05D003290 ORTHO05D003866 2.1e-28 131.3 79 82.3
Cc11_g05270 Coffea canephora HOM05D003290 ORTHO05D003866 3.7e-25 120.6 78 71.8
Aqoxy1G02273 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 1.8e-24 118.2 102 55.9
MBI13_g26466_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 2.4e-24 117.9 77 72.7
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 3.2e-21 107.5 90 61.1
MD16G1011500 Malus domestica HOM05D003290 ORTHO05D003866 6.9e-16 89.7 52 78.8
MD13G1014100 Malus domestica HOM05D003290 ORTHO05D003866 9.0e-16 89.4 70 64.3
Sopen00g005880 Solanum pennellii HOM05D003290 ORTHO05D003866 1.9e-10 71.6 95 44.2
Sopen04g009320 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-10 71.6 89 44.9
SEGI_28338 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 3.7e-09 67.4 82 43.9
PGSC0003DMG402029222 Solanum tuberosum HOM05D003290 ORTHO05D397822 1.3e-06 58.9 60 53.3
Cre01.g034150 Chlamydomonas reinhardtii HOM05D003290 ORTHO05D003866 6.5e-06 56.6 309 20.1


User provided reference genes

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