Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.6 Carica papaya HOM05D000098 ORTHO05D001079 1.4e-36 155.6 71 100.0
Thhalv10019549m.g Eutrema salsugineum HOM05D000098 ORTHO05D001079 1.3e-10 69.3 71 50.7
Cpa.g.sc754.1 Carica papaya HOM05D000098 ORTHO05D001079 6.6e-10 67.0 56 44.6
CARHR018410 Cardamine hirsuta HOM05D000098 ORTHO05D001079 2.5e-09 65.1 71 47.9
Sp5g22960 Schrenkiella parvula HOM05D000098 ORTHO05D001079 7.3e-09 63.5 70 48.6
Gohir.D06G069000 Gossypium hirsutum HOM05D000098 ORTHO05D001079 1.6e-08 62.4 53 50.9
Gorai.010G080600 Gossypium raimondii HOM05D000098 ORTHO05D001079 1.6e-08 62.4 53 50.9
BcaC03g14889 Brassica carinata HOM05D000098 ORTHO05D001079 2.1e-08 62.0 75 42.7
C02p23640 Brassica napus HOM05D000098 ORTHO05D001079 2.1e-08 62.0 75 42.7
Thecc.02G040100 Theobroma cacao HOM05D000098 ORTHO05D001079 2.8e-08 61.6 47 57.4
A02p14570 Brassica napus HOM05D000098 ORTHO05D001079 3.6e-08 61.2 75 42.7
BraA02t06527Z Brassica rapa HOM05D000098 ORTHO05D001079 3.6e-08 61.2 75 42.7
Gohir.A06G070400 Gossypium hirsutum HOM05D000098 ORTHO05D001079 4.7e-08 60.8 53 49.1
Sp5g22950 Schrenkiella parvula HOM05D000098 ORTHO05D001079 6.2e-08 60.5 54 53.7
BcaB03g15388 Brassica carinata HOM05D000098 ORTHO05D001079 8.1e-08 60.1 55 49.1
AL1G30160 Arabidopsis lyrata HOM05D000098 ORTHO05D001079 1.4e-07 59.3 70 42.9
AT1G17800 Arabidopsis thaliana HOM05D000098 ORTHO05D001079 1.4e-07 59.3 70 44.3
A07p32270 Brassica napus HOM05D000098 ORTHO05D001079 1.8e-07 58.9 55 49.1
BolC2t08493H Brassica oleracea HOM05D000098 ORTHO05D001079 1.8e-07 58.9 68 44.1
BraA07t30852Z Brassica rapa HOM05D000098 ORTHO05D001079 1.8e-07 58.9 55 49.1
Duzib052G0550 Durio zibethinus HOM05D000098 ORTHO05D001079 1.8e-07 58.9 65 44.6
Cpa.g.sc1142.3 Carica papaya HOM05D000098 ORTHO05D001079 2.4e-07 58.5 42 52.4
Thecc.02G040200 Theobroma cacao HOM05D000098 ORTHO05D001079 3.1e-07 58.2 55 47.3
BcaC08g46014 Brassica carinata HOM05D000098 ORTHO05D001079 5.2e-07 57.4 55 47.3
Duzib132G0243 Durio zibethinus HOM05D000098 ORTHO05D001079 6.8e-07 57.0 35 60.0
THA.LOC104812199 Tarenaya hassleriana HOM05D000098 ORTHO05D001079 6.8e-07 57.0 55 49.1
Thecc.06G033000 Theobroma cacao HOM05D000098 ORTHO05D001079 8.9e-07 56.6 54 48.1
Carub.0001s1753 Capsella rubella HOM05D000098 ORTHO05D001079 1.2e-06 56.2 63 39.7
Glyma.08G184800 Glycine max HOM05D000098 ORTHO05D001079 1.2e-06 56.2 53 43.4
Manes.10G131000 Manihot esculenta HOM05D000098 ORTHO05D001079 1.2e-06 56.2 64 48.4
COL.COLO4_17884 Corchorus olitorius HOM05D000098 ORTHO05D001079 1.5e-06 55.8 45 53.3
Duzib052G1038 Durio zibethinus HOM05D000098 ORTHO05D001079 1.5e-06 55.8 65 43.1
Thhalv10009632m.g Eutrema salsugineum HOM05D000098 ORTHO05D001079 2.0e-06 55.5 54 51.9
QL12p011649 Quercus lobata HOM05D000098 ORTHO05D001079 2.6e-06 55.1 53 39.6
Thecc.06G031700 Theobroma cacao HOM05D000098 ORTHO05D001079 3.4e-06 54.7 55 45.5
BcaB05g24324 Brassica carinata HOM05D000098 ORTHO05D001079 4.4e-06 54.3 59 42.4
GSVIVG01023001001 Vitis vinifera HOM05D000098 ORTHO05D001079 4.4e-06 54.3 58 46.6
Lj9A308T35 Lonicera japonica HOM05D000098 ORTHO05D001079 5.8e-06 53.9 55 47.3
Nitab4.5_0012172g0010 Nicotiana tabacum HOM05D000098 ORTHO05D001079 5.8e-06 53.9 46 56.5
Ciclev10003124m.g Citrus clementina HOM05D000098 ORTHO05D001079 7.6e-06 53.5 55 41.8
HanXRQChr11g0340401 Helianthus annuus HOM05D000098 ORTHO05D001079 9.9e-06 53.1 53 49.1
HanXRQChr11g0340441 Helianthus annuus HOM05D000098 ORTHO05D001079 9.9e-06 53.1 53 49.1
HanXRQChr11g0340461 Helianthus annuus HOM05D000098 ORTHO05D001079 9.9e-06 53.1 53 49.1
HanXRQChr17g0535601 Helianthus annuus HOM05D000098 ORTHO05D001079 9.9e-06 53.1 53 49.1
HanXRQChr17g0535621 Helianthus annuus HOM05D000098 ORTHO05D001079 9.9e-06 53.1 53 49.1
Manes.10G130900 Manihot esculenta HOM05D000098 ORTHO05D001079 9.9e-06 53.1 64 43.8


User provided reference genes

Program Settings