Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 4.4e-218 761.1 422 100.0
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 3.3e-157 558.9 349 78.8
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 2.1e-156 556.2 421 69.6
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 2.8e-156 555.8 348 80.2
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.5e-154 550.1 355 80.0
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 3.4e-154 548.9 350 80.0
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 4.5e-154 548.5 424 67.7
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.8e-154 548.1 425 69.4
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 2.9e-153 545.8 347 79.3
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 2.9e-153 545.8 427 73.5
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 1.9e-152 543.1 350 79.4
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 2.4e-152 542.7 418 68.4
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 3.5e-151 538.9 400 77.8
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 7.9e-151 537.7 409 72.1
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 1.0e-150 537.3 346 77.7
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 1.8e-150 536.6 422 72.3
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 6.7e-150 534.6 438 67.6
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.5e-149 533.5 422 68.2
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 3.7e-148 528.9 348 77.3
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.8e-148 528.5 360 74.7
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 1.1e-147 527.3 422 66.8
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.1e-147 527.3 339 78.2
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.1e-147 527.3 409 68.2
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.4e-147 526.9 421 69.1
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 1.8e-147 526.6 349 76.2
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.4e-147 526.2 434 65.9
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 2.4e-147 526.2 348 77.6
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 4.0e-147 525.4 425 69.6
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 5.3e-147 525.0 344 75.9
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 5.3e-147 525.0 344 75.9
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 6.9e-147 524.6 410 72.0
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 2.6e-146 522.7 411 67.6
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 5.8e-146 521.5 348 76.4
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 9.9e-146 520.8 358 72.3
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 2.9e-145 519.2 344 75.9
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 6.4e-145 518.1 338 76.0
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 1.6e-143 513.5 348 75.3
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 4.6e-143 511.9 336 75.6
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 6.0e-143 511.5 415 66.7
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 5.1e-142 508.4 348 74.1
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 6.7e-142 508.1 338 75.7
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 3.3e-141 505.8 349 73.6
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 9.6e-141 504.2 348 73.9
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 2.8e-140 502.7 337 74.2
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 2.4e-139 499.6 340 72.6
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 2.4e-139 499.6 335 74.3
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 1.5e-138 496.9 337 73.0
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 3.4e-138 495.7 340 71.5
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 4.5e-138 495.4 340 71.5
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 4.5e-138 495.4 340 71.5
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 5.8e-138 495.0 354 71.8
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 5.8e-138 495.0 336 73.8
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 5.8e-138 495.0 336 73.8
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 5.8e-138 495.0 346 70.5
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 1.7e-137 493.4 336 71.1
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 2.9e-137 492.7 340 71.2
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.8e-137 492.3 347 69.7
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 6.5e-137 491.5 339 72.9
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 6.5e-137 491.5 344 70.1
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 1.9e-136 490.0 336 71.1
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 3.2e-136 489.2 336 70.5
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 4.2e-136 488.8 338 71.6
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 4.2e-136 488.8 530 54.9
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 7.1e-136 488.0 347 69.2
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 9.3e-136 487.6 363 68.3
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 2.1e-135 486.5 338 72.2
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 2.7e-135 486.1 337 71.5
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 2.7e-135 486.1 337 72.1
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 2.7e-135 486.1 336 72.0
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 7.9e-135 484.6 335 73.1
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 7.9e-135 484.6 351 72.4
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 2.3e-134 483.0 356 69.7
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 3.9e-134 482.3 335 70.7
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 5.1e-134 481.9 420 61.4
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 2.5e-133 479.6 341 70.1
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 5.7e-133 478.4 336 72.0
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 1.3e-132 477.2 541 53.8
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 6.3e-132 474.9 339 71.1
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 1.4e-131 473.8 340 70.6
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 1.4e-131 473.8 340 70.6
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 1.8e-131 473.4 339 70.8
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 1.5e-130 470.3 282 79.8
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 2.0e-130 469.9 340 69.4
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 2.6e-130 469.5 340 69.4
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 3.4e-130 469.2 334 71.3
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 1.1e-128 464.2 335 70.1
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 2.5e-128 463.0 332 68.4
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 7.2e-128 461.5 336 70.8
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 5.7e-125 451.8 338 66.0
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 1.3e-124 450.7 344 68.0
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 2.8e-124 449.5 340 67.4
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 4.1e-123 445.7 474 54.6
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.7e-121 440.3 396 58.8
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 2.9e-121 439.5 336 65.8
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 7.9e-119 431.4 297 73.4
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 1.0e-118 431.0 340 65.3
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 2.0e-117 426.8 336 65.8
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 4.4e-117 425.6 340 64.1
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 7.4e-117 424.9 354 62.7
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 1.3e-116 424.1 347 63.1
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 3.4e-114 416.0 337 64.1
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 8.8e-110 401.4 299 66.9
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 9.7e-109 397.9 295 67.8
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 7.0e-107 391.7 226 84.5
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 7.0e-107 391.7 295 66.4
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 2.0e-106 390.2 264 74.6
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 7.7e-106 388.3 225 81.3
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 5.0e-105 385.6 215 86.0
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 8.8e-102 374.8 266 67.3
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.7e-97 360.5 558 40.7
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 3.8e-97 359.4 265 69.4
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 6.5e-97 358.6 288 63.2
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 1.5e-96 357.5 258 66.3
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 1.4e-91 340.9 317 70.0
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 1.4e-91 340.9 306 67.6
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 1.8e-91 340.5 303 67.3
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 3.8e-89 332.8 202 77.7
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.3e-84 315.1 288 55.6
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.0e-81 308.1 215 69.8
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.3e-81 307.0 216 70.4
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.0e-78 298.1 333 52.9
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 3.2e-75 286.6 228 62.7
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 9.8e-69 265.0 271 58.7
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.1e-43 181.8 254 40.6
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 7.1e-43 179.1 246 39.4
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 8.1e-31 139.0 290 34.8
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.0e-29 134.4 130 57.7
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 4.6e-26 123.2 123 55.3
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 7.9e-26 122.5 122 53.3
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.8e-25 121.3 68 77.9
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 5.1e-25 119.8 176 41.5
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 1.1e-24 118.6 130 53.1
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.5e-24 118.2 67 79.1
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.5e-24 118.2 67 79.1
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 2.5e-24 117.5 122 51.6
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 5.6e-24 116.3 68 73.5
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 5.6e-24 116.3 68 73.5
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.4e-24 115.9 123 48.8
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 1.6e-23 114.8 68 72.1
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 4.8e-23 113.2 88 68.2
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.1e-22 112.1 68 70.6
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 1.6e-15 88.2 230 30.0
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 3.1e-14 84.0 245 28.6
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.6e-13 80.9 168 31.5
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 4.5e-13 80.1 172 34.9
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 3.8e-12 77.0 49 79.6
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 1.6e-10 71.6 171 32.2
Atru.chr3.79 Acer truncatum HOM05D037071 ORTHO05D010002 5.3e-06 56.6 29 86.2


User provided reference genes

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