Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.426 Carica papaya HOM05D003314 ORTHO05D004164 3.8e-48 194.5 98 100.0
Nn2g10926 Nelumbo nucifera HOM05D003314 ORTHO05D004164 1.1e-47 193.0 98 99.0
Aqoxy4G02458 Aquilegia oxysepala HOM05D003314 ORTHO05D004164 2.5e-47 191.8 98 98.0
COL.COLO4_11092 Corchorus olitorius HOM05D003314 ORTHO05D004164 2.5e-47 191.8 98 98.0
Gohir.A03G028500 Gossypium hirsutum HOM05D003314 ORTHO05D004164 2.5e-47 191.8 98 98.0
Gohir.D03G140100 Gossypium hirsutum HOM05D003314 ORTHO05D004164 2.5e-47 191.8 98 98.0
Gorai.003G146900 Gossypium raimondii HOM05D003314 ORTHO05D004164 2.5e-47 191.8 98 98.0
Lsat_1_v5_gn_5_172641 Lactuca sativa HOM05D003314 ORTHO05D004164 2.5e-47 191.8 98 96.9
THA.LOC104800751 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 2.5e-47 191.8 98 98.0
Thecc.09G352300 Theobroma cacao HOM05D003314 ORTHO05D004164 2.5e-47 191.8 98 98.0
TWI31G0289 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 2.5e-47 191.8 98 98.0
TAR636G0028 Trochodendron aralioides HOM05D003314 ORTHO05D002223 2.5e-47 191.8 98 98.0
TAR636G3324 Trochodendron aralioides HOM05D003314 ORTHO05D004164 2.5e-47 191.8 98 98.0
GSVIVG01024699001 Vitis vinifera HOM05D003314 ORTHO05D004164 2.5e-47 191.8 98 98.0
Cc01_g14510 Coffea canephora HOM05D003314 ORTHO05D004164 3.2e-47 191.4 96 100.0
DCAR_007359 Daucus carota HOM05D003314 ORTHO05D004164 3.2e-47 191.4 98 96.9
Lj6g0001244 Lotus japonicus HOM05D003314 ORTHO05D004164 5.5e-47 190.7 98 96.9
PSO017G4706 Papaver somniferum HOM05D003314 ORTHO05D004164 5.5e-47 190.7 98 96.9
PSO170G0130 Papaver somniferum HOM05D003314 ORTHO05D004164 5.5e-47 190.7 98 96.9
vmacro02947 Vaccinium macrocarpon HOM05D003314 ORTHO05D004164 5.5e-47 190.7 98 96.9
Ah.01g002410 Amaranthus hybridus HOM05D003314 ORTHO05D004164 7.1e-47 190.3 98 95.9
CANSAT54G2389 Cannabis sativa HOM05D003314 ORTHO05D004164 7.1e-47 190.3 98 95.9
AUR62025049 Chenopodium quinoa HOM05D003314 ORTHO05D004164 7.1e-47 190.3 98 96.9
AUR62041217 Chenopodium quinoa HOM05D003314 ORTHO05D004164 7.1e-47 190.3 98 96.9
Ca_14964_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 7.1e-47 190.3 98 95.9
Haze_24369 Corylus avellana HOM05D003314 ORTHO05D004164 7.1e-47 190.3 98 96.9
HanXRQChr01g0011671 Helianthus annuus HOM05D003314 ORTHO05D004164 7.1e-47 190.3 98 95.9
Hma1.2p1_1981F.1_g309920 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 7.1e-47 190.3 98 96.9
QL01p039122 Quercus lobata HOM05D003314 ORTHO05D004164 7.1e-47 190.3 97 96.9
CSS0022626 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 9.3e-47 189.9 98 94.9
CSS0049027 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 9.3e-47 189.9 98 94.9
Glyma.18G060600 Glycine max HOM05D003314 ORTHO05D004164 9.3e-47 189.9 98 96.9
Atru.chr3.4168 Acer truncatum HOM05D003314 ORTHO05D004164 1.2e-46 189.5 98 95.9
CsaV3_6G016080 Cucumis sativus L. HOM05D003314 ORTHO05D004164 1.2e-46 189.5 98 95.9
FvH4_3g39080 Fragaria vesca HOM05D003314 ORTHO05D004164 1.2e-46 189.5 98 95.9
FAN21G3397 Fragaria x ananassa HOM05D003314 ORTHO05D004164 1.2e-46 189.5 98 95.9
FAN25G2774 Fragaria x ananassa HOM05D003314 ORTHO05D004164 1.2e-46 189.5 98 95.9
HanXRQChr08g0229151 Helianthus annuus HOM05D003314 ORTHO05D004164 1.2e-46 189.5 98 95.9
Lalb_Chr15g0083041 Lupinus albus HOM05D003314 ORTHO05D004164 1.2e-46 189.5 98 96.9
Manes.18G141800 Manihot esculenta HOM05D003314 ORTHO05D004164 1.2e-46 189.5 98 95.9
Potri.009G073800 Populus trichocarpa HOM05D003314 ORTHO05D004164 1.2e-46 189.5 98 95.9
RcHm_v2.0_Chr5g0070401 Rosa chinensis HOM05D003314 ORTHO05D004164 1.2e-46 189.5 98 95.9
Ciclev10027872m.g Citrus clementina HOM05D003314 ORTHO05D004164 1.6e-46 189.1 98 95.9
AL1G17230 Arabidopsis lyrata HOM05D003314 ORTHO05D004164 2.1e-46 188.7 98 96.9
AT1G07110 Arabidopsis thaliana HOM05D003314 ORTHO05D004164 2.1e-46 188.7 98 96.9
Carub.0001s0639 Capsella rubella HOM05D003314 ORTHO05D004164 2.1e-46 188.7 98 96.9
CARHR006800 Cardamine hirsuta HOM05D003314 ORTHO05D004164 2.1e-46 188.7 98 96.9
Eucgr.J01899 Eucalyptus grandis HOM05D003314 ORTHO05D004164 2.1e-46 188.7 98 95.9
Thhalv10006901m.g Eutrema salsugineum HOM05D003314 ORTHO05D004164 2.1e-46 188.7 98 96.9
THA.LOC104815810 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 2.1e-46 188.7 98 96.9
EL10Ac9g22391 Beta vulgaris HOM05D003314 ORTHO05D004164 2.7e-46 188.3 98 95.9
Cfa011730 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.7e-46 188.3 98 95.9
MD11G1068700 Malus domestica HOM05D003314 ORTHO05D004164 2.7e-46 188.3 98 94.9
Prupe.6G053800 Prunus persica HOM05D003314 ORTHO05D004164 2.7e-46 188.3 98 95.9
Duzib150G1198 Durio zibethinus HOM05D003314 ORTHO05D004164 3.5e-46 188.0 98 96.9
Psat5g157680 Pisum sativum HOM05D003314 ORTHO05D004164 3.5e-46 188.0 97 95.9
Potri.001G279100 Populus trichocarpa HOM05D003314 ORTHO05D004164 3.5e-46 188.0 98 95.9
BcaB03g13407 Brassica carinata HOM05D003314 ORTHO05D004164 4.6e-46 187.6 98 95.9
A08p35790 Brassica napus HOM05D003314 ORTHO05D004164 4.6e-46 187.6 98 95.9
C08p02820 Brassica napus HOM05D003314 ORTHO05D004164 4.6e-46 187.6 98 95.9
BolC8t47077H Brassica oleracea HOM05D003314 ORTHO05D004164 4.6e-46 187.6 98 95.9
BraA08t35486Z Brassica rapa HOM05D003314 ORTHO05D004164 4.6e-46 187.6 98 95.9
CiPaw.13G074400 Carya illinoinensis HOM05D003314 ORTHO05D004164 4.6e-46 187.6 98 94.9
Glyma.11G169700 Glycine max HOM05D003314 ORTHO05D004164 4.6e-46 187.6 98 95.9
Medtr3g464770 Medicago truncatula HOM05D003314 ORTHO05D004164 4.6e-46 187.6 98 94.9
Phvul.006G069900 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 4.6e-46 187.6 98 95.9
Psat2g055960 Pisum sativum HOM05D003314 ORTHO05D004164 4.6e-46 187.6 98 93.9
SalBow2G2371 Salvia bowleyana HOM05D003314 ORTHO05D004164 4.6e-46 187.6 96 96.9
TPR.G32920 Trifolium pratense HOM05D003314 ORTHO05D004164 4.6e-46 187.6 98 94.9
VMungo0540G1658 Vigna mungo HOM05D003314 ORTHO05D004164 6.1e-46 187.2 98 94.9
Lj1A130T38 Lonicera japonica HOM05D003314 ORTHO05D004164 7.9e-46 186.8 97 94.8
Oeu051518.1 Olea europaea HOM05D003314 ORTHO05D004164 7.9e-46 186.8 98 93.9
Peaxi162Scf00540g00022 Petunia axillaris HOM05D003314 ORTHO05D004164 7.9e-46 186.8 96 95.8
PGR119G0996 Punica granatum HOM05D003314 ORTHO05D004164 7.9e-46 186.8 98 94.9
Sed0000995 Sechium edule HOM05D003314 ORTHO05D004164 7.9e-46 186.8 98 94.9
SGA_v2.0_scaffold146G36142 Striga asiatica HOM05D003314 ORTHO05D004164 7.9e-46 186.8 96 95.8
Aa31LG1G6350 Aethionema arabicum HOM05D003314 ORTHO05D004164 1.0e-45 186.4 98 95.9
CSS0023090 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 1.0e-45 186.4 98 94.9
CDE06G0062 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 1.0e-45 186.4 98 93.9
Ca_05629_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 1.0e-45 186.4 98 93.9
Medtr5g071900 Medicago truncatula HOM05D003314 ORTHO05D004164 1.0e-45 186.4 98 92.9
Nitab4.5_0000839g0080 Nicotiana tabacum HOM05D003314 ORTHO05D004164 1.0e-45 186.4 96 94.8
BcaC07g42027 Brassica carinata HOM05D003314 ORTHO05D004164 1.3e-45 186.0 98 95.9
A09p66600 Brassica napus HOM05D003314 ORTHO05D004164 1.3e-45 186.0 98 95.9
C08p50810 Brassica napus HOM05D003314 ORTHO05D004164 1.3e-45 186.0 98 95.9
BolC8t52609H Brassica oleracea HOM05D003314 ORTHO05D004164 1.3e-45 186.0 98 95.9
BraA09t42000Z Brassica rapa HOM05D003314 ORTHO05D004164 1.3e-45 186.0 98 95.9
Sabra09G0055800 Salix brachista HOM05D003314 ORTHO05D004164 1.3e-45 186.0 98 93.9
MBI15_g29380_MAGBIO Magnolia biondii HOM05D003314 ORTHO05D004164 1.8e-45 185.7 103 93.2
CAN.G1095.9 Capsicum annuum HOM05D003314 ORTHO05D004164 2.3e-45 185.3 96 94.8
Migut.N00780 Erythranthe guttata HOM05D003314 ORTHO05D004164 2.3e-45 185.3 96 94.8
Sopen06g033530 Solanum pennellii HOM05D003314 ORTHO05D004164 2.3e-45 185.3 96 94.8
PGSC0003DMG400030370 Solanum tuberosum HOM05D003314 ORTHO05D004164 2.3e-45 185.3 96 94.8
HPP92_013781 Vanilla planifolia HOM05D003314 ORTHO05D004164 2.3e-45 185.3 98 95.9
A10p05630 Brassica napus HOM05D003314 ORTHO05D004164 3.0e-45 184.9 98 93.9
C05p05170 Brassica napus HOM05D003314 ORTHO05D004164 3.0e-45 184.9 98 93.9
BolC5t29289H Brassica oleracea HOM05D003314 ORTHO05D004164 3.0e-45 184.9 98 93.9
ECA247G1043 Erigeron canadensis HOM05D003314 ORTHO05D004164 3.0e-45 184.9 98 92.9
arahy.Tifrunner.gnm1.ann1.H173G9 Arachis hypogaea HOM05D003314 ORTHO05D004164 3.9e-45 184.5 99 94.9
LjContig00141g0002673 Lotus japonicus HOM05D003314 ORTHO05D004164 3.9e-45 184.5 98 92.9
Nitab4.5_0002352g0010 Nicotiana tabacum HOM05D003314 ORTHO05D004164 3.9e-45 184.5 95 94.7
TAR623G0703 Trochodendron aralioides HOM05D003314 ORTHO05D004164 3.9e-45 184.5 98 93.9
arahy.Tifrunner.gnm1.ann1.99UL3I Arachis hypogaea HOM05D003314 ORTHO05D004164 5.1e-45 184.1 103 92.2
CDE12G0377 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 5.1e-45 184.1 98 92.9
ECA248G0301 Erigeron canadensis HOM05D003314 ORTHO05D004164 5.1e-45 184.1 98 91.8
Solyc06g082150.4 Solanum lycopersicum HOM05D003314 ORTHO05D004164 5.1e-45 184.1 96 93.8
unitig_60.g25552 Utricularia gibba HOM05D003314 ORTHO05D004164 5.1e-45 184.1 96 93.8
MSTRG.12679 Avicennia marina HOM05D003314 ORTHO05D004164 6.7e-45 183.7 96 94.8
Lsat_1_v5_gn_9_19140 Lactuca sativa HOM05D003314 ORTHO05D004164 8.7e-45 183.3 98 92.9
TPR.G5069 Trifolium pratense HOM05D003314 ORTHO05D004164 8.7e-45 183.3 96 92.7
Zm00001eb282250 Zea mays HOM05D003314 ORTHO05D004164 8.7e-45 183.3 98 91.8
Os05g0164100 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 1.1e-44 183.0 98 91.8
TWI79G1066 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 1.5e-44 182.6 98 95.9
arahy.Tifrunner.gnm1.ann1.UVU1B7 Arachis hypogaea HOM05D003314 ORTHO05D004164 1.9e-44 182.2 98 90.8
arahy.Tifrunner.gnm1.ann1.Y0JIV8 Arachis hypogaea HOM05D003314 ORTHO05D004164 2.5e-44 181.8 98 89.8
Lj2A1086T64 Lonicera japonica HOM05D003314 ORTHO05D004164 2.5e-44 181.8 104 90.4
CiPaw.14G057100 Carya illinoinensis HOM05D003314 ORTHO05D004164 3.3e-44 181.4 98 92.9
Os03g0294200 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 5.7e-44 180.6 96 91.7
Zm00001eb013550 Zea mays HOM05D003314 ORTHO05D004164 5.7e-44 180.6 96 90.6
SMO244G0010 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 7.4e-44 180.3 97 89.7
Nitab4.5_0000752g0070 Nicotiana tabacum HOM05D003314 ORTHO05D004164 9.7e-44 179.9 95 93.7
Sp1g05820 Schrenkiella parvula HOM05D003314 ORTHO05D004164 9.7e-44 179.9 95 95.8
AagrBONN_evm.TU.Sc2ySwM_117.3149 Anthoceros agrestis HOM05D003314 ORTHO05D004164 1.3e-43 179.5 97 89.7
MSTRG.17878 Avicennia marina HOM05D003314 ORTHO05D004164 1.3e-43 179.5 96 92.7
Mapoly0056s0097 Marchantia polymorpha HOM05D003314 ORTHO05D004164 2.2e-43 178.7 98 87.8
Glyma.02G228700 Glycine max HOM05D003314 ORTHO05D004164 2.8e-43 178.3 98 90.8
Glyma.14G195700 Glycine max HOM05D003314 ORTHO05D004164 2.8e-43 178.3 98 90.8
Lalb_Chr17g0345221 Lupinus albus HOM05D003314 ORTHO05D004164 2.8e-43 178.3 98 90.8
MD03G1064800 Malus domestica HOM05D003314 ORTHO05D004164 6.3e-43 177.2 93 94.6
Phvul.008G259400 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 6.3e-43 177.2 98 90.8
Pp3c16_2340 Physcomitrium patens HOM05D003314 ORTHO05D004164 1.1e-42 176.4 97 85.6
SGA_v2.0_scaffold120G32908 Striga asiatica HOM05D003314 ORTHO05D004164 1.4e-42 176.0 92 94.6
BcaC05g24676 Brassica carinata HOM05D003314 ORTHO05D004164 3.1e-42 174.9 92 95.7
Pp3c25_1530 Physcomitrium patens HOM05D003314 ORTHO05D004164 3.1e-42 174.9 97 84.5
SMO174G0065 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 6.9e-42 173.7 96 85.4
Pp3c21_10950 Physcomitrium patens HOM05D003314 ORTHO05D004164 9.0e-42 173.3 97 82.5
ATR0681G099 Amborella trichopoda HOM05D003314 ORTHO05D004164 4.5e-41 171.0 91 93.4
Dinv09644 Davidia involucrata HOM05D003314 ORTHO05D004164 4.5e-41 171.0 87 97.7
Pp3c19_20300 Physcomitrium patens HOM05D003314 ORTHO05D004164 5.9e-41 170.6 98 80.6
MELO3C026830.2 Cucumis melo HOM05D003314 ORTHO05D004164 1.0e-40 169.9 87 96.6
SEGI_28657 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 1.0e-40 169.9 92 89.1
SEGI_19911 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 5.1e-37 157.5 95 82.1
Rhsim13G0067500 Rhododendron simsii HOM05D003314 ORTHO05D004164 7.7e-33 143.7 73 97.3
Duzib168G0330 Durio zibethinus HOM05D003314 ORTHO05D004164 2.5e-31 138.7 75 92.0
Actinidia32630 Actinidia chinensis HOM05D003314 ORTHO05D004164 2.7e-30 135.2 112 67.0
ClCG02G019450 Citrullus lanatus HOM05D003314 ORTHO05D004164 3.6e-30 134.8 69 98.6
PRCOL_00004422 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 1.5e-28 129.4 97 60.8
Cre16.g691888 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 7.7e-25 117.1 80 68.8
Cre16.g652150 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 3.8e-24 114.8 92 57.6
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 2.1e-22 109.0 86 55.8
BraA10t42824Z Brassica rapa HOM05D003314 ORTHO05D004164 4.7e-22 107.8 117 56.4
Haze_27150 Corylus avellana HOM05D003314 ORTHO05D004164 1.3e-19 99.8 80 61.2
Cfa025454 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.7e-19 99.4 93 49.5
Dinv28665 Davidia involucrata HOM05D003314 ORTHO05D004164 1.7e-19 99.4 50 98.0
MCO01G554 Micromonas commoda HOM05D003314 ORTHO05D004164 1.7e-16 89.4 82 50.0
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.6e-14 82.8 95 45.3
PSO302G0047 Papaver somniferum HOM05D003314 ORTHO05D004164 4.0e-13 78.2 61 72.1
MCO04G290 Micromonas commoda HOM05D003314 ORTHO05D004164 5.7e-12 74.3 89 39.3
Cfa024020 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.8e-11 72.0 83 42.2
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 9.1e-10 67.0 47 66.0
HanXRQChr10g0315241 Helianthus annuus HOM05D003314 ORTHO05D004164 1.3e-08 63.2 38 78.9
HanXRQChr05g0144901 Helianthus annuus HOM05D003314 ORTHO05D222853 3.2e-07 58.5 62 50.0


User provided reference genes

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