Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.380 Carica papaya HOM05D004936 ORTHO05D005977 9.8e-12 72.0 34 100.0
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 1.0e-08 62.0 33 90.9
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 1.0e-08 62.0 33 90.9
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 1.7e-08 61.2 31 93.5
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 2.3e-08 60.8 33 87.9
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 2.3e-08 60.8 31 93.5
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 2.3e-08 60.8 31 93.5
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 3.0e-08 60.5 33 87.9
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 3.0e-08 60.5 33 87.9
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 3.0e-08 60.5 34 85.3
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 3.0e-08 60.5 33 87.9
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 3.0e-08 60.5 29 96.6
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 3.0e-08 60.5 33 87.9
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 5.1e-08 59.7 34 85.3
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 5.1e-08 59.7 31 90.3
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 5.1e-08 59.7 31 90.3
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 5.1e-08 59.7 33 87.9
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 6.6e-08 59.3 33 84.8
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 6.6e-08 59.3 31 87.1
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 6.6e-08 59.3 31 87.1
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 6.6e-08 59.3 31 87.1
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 6.6e-08 59.3 31 87.1
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 6.6e-08 59.3 31 87.1
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 6.6e-08 59.3 31 90.3
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 6.6e-08 59.3 31 90.3
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 8.6e-08 58.9 33 84.8
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 8.6e-08 58.9 33 84.8
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 8.6e-08 58.9 33 84.8
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 8.6e-08 58.9 33 84.8
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 8.6e-08 58.9 33 84.8
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 8.6e-08 58.9 31 90.3
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 1.1e-07 58.5 31 87.1
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 1.1e-07 58.5 31 87.1
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 1.1e-07 58.5 31 87.1
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 1.1e-07 58.5 33 84.8
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 1.5e-07 58.2 33 84.8
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 1.5e-07 58.2 33 81.8
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 1.5e-07 58.2 31 87.1
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.5e-07 58.2 31 87.1
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 1.5e-07 58.2 33 81.8
arahy.Tifrunner.gnm1.ann1.BM2UDG Arachis hypogaea HOM05D004936 ORTHO05D086586 1.9e-07 57.8 28 92.9
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 1.9e-07 57.8 31 87.1
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 1.9e-07 57.8 31 87.1
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 2.5e-07 57.4 31 83.9
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 2.5e-07 57.4 33 81.8
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 2.5e-07 57.4 31 87.1
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 2.5e-07 57.4 33 75.8
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 2.5e-07 57.4 33 81.8
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 3.3e-07 57.0 29 86.2
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 3.3e-07 57.0 29 89.7
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 3.3e-07 57.0 31 83.9
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 3.3e-07 57.0 34 79.4
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 3.3e-07 57.0 31 83.9
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 3.3e-07 57.0 33 81.8
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 4.3e-07 56.6 33 81.8
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 4.3e-07 56.6 31 83.9
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 4.3e-07 56.6 30 83.3
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 5.6e-07 56.2 30 86.7
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 5.6e-07 56.2 28 89.3
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 5.6e-07 56.2 31 80.6
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 5.6e-07 56.2 33 78.8
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 5.6e-07 56.2 32 81.2
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 5.6e-07 56.2 31 83.9
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 7.3e-07 55.8 31 80.6
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 7.3e-07 55.8 31 83.9
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 7.3e-07 55.8 31 80.6
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 7.3e-07 55.8 31 80.6
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 7.3e-07 55.8 31 80.6
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 7.3e-07 55.8 33 75.8
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 7.3e-07 55.8 31 83.9
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 9.5e-07 55.5 33 78.8
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 9.5e-07 55.5 33 78.8
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 9.5e-07 55.5 29 86.2
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 9.5e-07 55.5 29 86.2
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 9.5e-07 55.5 29 86.2
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 9.5e-07 55.5 31 80.6
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 9.5e-07 55.5 31 80.6
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 1.2e-06 55.1 31 80.6
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 1.2e-06 55.1 31 80.6
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 1.2e-06 55.1 31 80.6
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 1.2e-06 55.1 31 80.6
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 1.2e-06 55.1 31 80.6
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 1.2e-06 55.1 31 80.6
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 1.2e-06 55.1 31 80.6
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 1.2e-06 55.1 31 80.6
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 1.2e-06 55.1 31 80.6
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 1.2e-06 55.1 31 80.6
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 1.2e-06 55.1 33 75.8
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 1.6e-06 54.7 28 89.3
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 2.1e-06 54.3 29 82.8
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 2.8e-06 53.9 28 85.7
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 2.8e-06 53.9 33 75.8
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 2.8e-06 53.9 28 89.3
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 3.6e-06 53.5 31 77.4
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 3.6e-06 53.5 31 77.4
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 3.6e-06 53.5 31 77.4
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 3.6e-06 53.5 31 77.4
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 3.6e-06 53.5 31 77.4
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 3.6e-06 53.5 31 77.4
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 3.6e-06 53.5 31 77.4
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 3.6e-06 53.5 29 82.8
arahy.Tifrunner.gnm1.ann1.94PN3C Arachis hypogaea HOM05D004936 ORTHO05D005977 6.2e-06 52.8 26 88.5
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 6.2e-06 52.8 28 85.7
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 8.1e-06 52.4 31 77.4


User provided reference genes

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