Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 1.1e-134 483.4 255 100.0
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 8.7e-121 437.2 246 93.5
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 1.5e-120 436.4 246 93.1
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 2.5e-120 435.6 246 93.1
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 4.3e-120 434.9 246 93.1
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 5.7e-120 434.5 246 92.7
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 5.7e-120 434.5 246 93.5
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 7.4e-120 434.1 246 92.3
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 7.4e-120 434.1 246 92.3
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 1.6e-119 433.0 246 93.5
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 6.3e-119 431.0 246 91.9
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 6.3e-119 431.0 246 91.1
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 6.3e-119 431.0 246 92.7
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 8.2e-119 430.6 245 91.8
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 1.1e-118 430.3 246 92.3
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 1.4e-118 429.9 246 91.5
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 1.4e-118 429.9 246 91.5
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.4e-118 429.9 246 91.9
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.4e-118 429.9 246 91.5
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.8e-118 429.5 246 91.9
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 2.4e-118 429.1 246 91.9
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 2.4e-118 429.1 246 90.7
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 3.1e-118 428.7 246 91.9
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 4.1e-118 428.3 246 91.1
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 4.1e-118 428.3 246 91.9
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 4.1e-118 428.3 246 91.5
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 4.1e-118 428.3 246 91.5
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 5.3e-118 427.9 246 91.1
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 5.3e-118 427.9 246 92.3
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 6.9e-118 427.6 246 91.5
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 9.0e-118 427.2 246 91.5
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 9.0e-118 427.2 246 91.9
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 9.0e-118 427.2 246 92.3
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 1.2e-117 426.8 246 91.9
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 1.2e-117 426.8 246 91.5
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.5e-117 426.4 246 89.8
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 1.5e-117 426.4 246 91.9
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.5e-117 426.4 246 91.1
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 2.0e-117 426.0 246 91.5
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 2.6e-117 425.6 246 91.5
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.5e-117 424.9 246 91.1
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 4.5e-117 424.9 246 92.3
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 5.9e-117 424.5 246 89.8
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 5.9e-117 424.5 246 91.5
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 1.0e-116 423.7 246 90.2
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.0e-116 423.7 246 89.8
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 1.3e-116 423.3 246 90.2
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 1.3e-116 423.3 246 90.2
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 1.3e-116 423.3 246 90.2
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 1.3e-116 423.3 246 90.2
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.3e-116 423.3 246 89.8
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 2.2e-116 422.5 246 89.8
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 2.2e-116 422.5 246 90.2
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 2.2e-116 422.5 246 90.2
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 2.9e-116 422.2 246 89.8
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 5.0e-116 421.4 246 89.4
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 5.0e-116 421.4 246 89.4
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 5.0e-116 421.4 246 89.4
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 8.5e-116 420.6 246 89.4
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 1.1e-115 420.2 246 89.4
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.1e-115 420.2 246 89.8
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.1e-115 420.2 246 88.6
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 1.1e-115 420.2 246 89.0
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 1.4e-115 419.9 246 89.4
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 1.4e-115 419.9 246 89.4
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 1.4e-115 419.9 246 89.4
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 1.9e-115 419.5 246 89.4
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 2.5e-115 419.1 246 89.0
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 2.5e-115 419.1 247 89.9
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 2.5e-115 419.1 247 89.9
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 3.2e-115 418.7 246 89.4
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 4.2e-115 418.3 246 89.8
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 4.2e-115 418.3 246 89.0
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 7.2e-115 417.5 246 89.4
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 9.4e-115 417.2 246 88.6
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 9.4e-115 417.2 246 88.2
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 9.4e-115 417.2 246 88.6
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 9.4e-115 417.2 246 89.4
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 1.2e-114 416.8 247 89.1
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 1.2e-114 416.8 247 89.1
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 1.6e-114 416.4 246 88.2
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 1.6e-114 416.4 246 89.0
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 1.6e-114 416.4 246 89.0
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.6e-114 416.4 246 88.2
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 2.1e-114 416.0 255 87.1
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.1e-114 416.0 246 89.0
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.1e-114 416.0 246 89.0
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 3.6e-114 415.2 246 88.6
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 3.6e-114 415.2 246 89.0
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 3.6e-114 415.2 246 88.2
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 4.6e-114 414.8 279 81.4
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 4.6e-114 414.8 246 87.8
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.0e-113 413.7 246 87.8
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 2.3e-113 412.5 246 87.4
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 3.0e-113 412.1 246 87.0
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 3.0e-113 412.1 246 88.2
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 2.5e-112 409.1 246 88.2
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 4.3e-112 408.3 246 88.2
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.7e-112 407.9 269 82.2
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 9.7e-112 407.1 246 87.8
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 1.3e-111 406.8 262 83.6
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-111 406.8 269 81.8
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-111 406.8 269 81.8
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-111 406.8 269 81.8
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-111 406.8 269 81.8
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 1.3e-111 406.8 246 87.0
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 2.2e-111 406.0 246 85.8
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.8e-111 404.8 246 86.2
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 8.2e-111 404.1 246 86.6
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 1.8e-110 402.9 246 85.8
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 3.1e-110 402.1 246 85.4
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 5.9e-109 397.9 256 84.0
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 5.0e-108 394.8 227 91.2
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 2.1e-106 389.4 246 84.1
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 3.3e-104 382.1 273 75.8
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 4.4e-104 381.7 247 82.2
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 1.7e-103 379.8 220 90.5
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 2.8e-103 379.0 246 81.7
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 5.0e-100 368.2 226 85.4
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 6.5e-100 367.9 247 77.3
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.4e-97 360.1 246 79.7
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 5.3e-94 348.2 247 74.5
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 2.6e-93 345.9 287 67.2
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.3e-92 343.6 198 91.4
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 4.2e-91 338.6 196 90.8
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 3.6e-90 335.5 197 89.3
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.5e-88 330.1 246 72.4
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 4.4e-88 328.6 249 68.3
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 4.8e-87 325.1 250 74.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 8.8e-81 304.3 198 82.3
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 8.8e-81 304.3 198 82.3
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 6.3e-79 298.1 252 63.9
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.5e-75 287.0 246 70.3
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 5.2e-73 278.5 247 61.5
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 4.5e-69 265.4 191 77.0
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 6.0e-53 211.8 154 76.0
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.2e-49 198.7 131 83.2
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.6e-48 194.9 178 62.9
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 1.4e-46 190.7 110 89.1
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 5.8e-40 168.7 240 43.3
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 4.6e-37 159.1 276 40.2
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.8e-37 158.3 213 48.4
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 7.3e-35 151.8 235 40.4
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 5.8e-32 142.1 106 75.5
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 1.9e-30 137.1 80 88.8
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 8.7e-28 128.3 130 57.7
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 1.8e-17 94.0 75 70.7
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 3.4e-16 89.7 48 93.8
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 2.9e-15 86.7 48 91.7
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 1.3e-12 77.8 85 52.9
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 2.5e-11 73.6 62 66.1
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 6.9e-09 65.5 131 42.7


User provided reference genes

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