Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.293 Carica papaya HOM05D007641 ORTHO05D007630 2.8e-263 911.4 449 100.0
Manes.02G212232 Manihot esculenta HOM05D007641 ORTHO05D007630 9.9e-43 178.7 395 35.2
QL01p024477 Quercus lobata HOM05D007641 ORTHO05D007630 1.2e-40 171.8 360 37.5
Gohir.A08G000032 Gossypium hirsutum HOM05D007641 ORTHO05D007630 1.6e-40 171.4 401 35.9
FvH4_3g40550 Fragaria vesca HOM05D007641 ORTHO05D007630 6.6e-39 166.0 369 36.9
CiPaw.13G063300 Carya illinoinensis HOM05D007641 ORTHO05D007630 1.9e-38 164.5 371 35.0
Dinv28733 Davidia involucrata HOM05D007641 ORTHO05D007630 1.9e-38 164.5 380 34.7
Duzib168G1492 Durio zibethinus HOM05D007641 ORTHO05D007630 2.5e-38 164.1 376 35.4
RcHm_v2.0_Chr5g0073231 Rosa chinensis HOM05D007641 ORTHO05D007630 4.3e-38 163.3 412 33.7
FAN16G1217 Fragaria x ananassa HOM05D007641 ORTHO05D007630 1.6e-37 161.4 369 36.6
FAN25G3378 Fragaria x ananassa HOM05D007641 ORTHO05D007630 6.2e-37 159.5 371 36.1
Atru.chr10.2293 Acer truncatum HOM05D007641 ORTHO05D007630 1.4e-36 158.3 389 33.2
Actinidia34497 Actinidia chinensis HOM05D007641 ORTHO05D007630 3.4e-35 153.7 377 34.0
Aqoxy1G01263 Aquilegia oxysepala HOM05D007641 ORTHO05D007630 4.9e-34 149.8 373 34.0
Ciclev10004023m.g Citrus clementina HOM05D007641 ORTHO05D007630 1.9e-33 147.9 331 36.9
Gorai.004G000600 Gossypium raimondii HOM05D007641 ORTHO05D007630 4.2e-33 146.7 393 31.8
FAN11G1956 Fragaria x ananassa HOM05D007641 ORTHO05D007630 5.4e-33 146.4 343 35.0
CsaV3_6G013130 Cucumis sativus L. HOM05D007641 ORTHO05D007630 3.5e-32 143.7 347 35.7
Potri.013G157800 Populus trichocarpa HOM05D007641 ORTHO05D007630 3.5e-32 143.7 311 35.7
Thecc.09G364100 Theobroma cacao HOM05D007641 ORTHO05D007630 1.0e-31 142.1 376 33.0
TWI79G1607 Tripterygium wilfordii HOM05D007641 ORTHO05D007630 1.9e-30 137.9 409 30.8
Sabra13G0126700 Salix brachista HOM05D007641 ORTHO05D002352 4.3e-30 136.7 358 33.5
Glyma.18G052000 Glycine max HOM05D007641 ORTHO05D007630 5.6e-30 136.3 339 34.8
CANSAT54G2173 Cannabis sativa HOM05D007641 ORTHO05D007630 6.2e-29 132.9 369 32.2
ClCG02G019020 Citrullus lanatus HOM05D007641 ORTHO05D007630 1.4e-28 131.7 314 34.7
Nn2g10289 Nelumbo nucifera HOM05D007641 ORTHO05D007630 3.1e-28 130.6 378 31.5
Psat5g147960 Pisum sativum HOM05D007641 ORTHO05D007630 1.2e-27 128.6 340 35.0
Sopen09g001120 Solanum pennellii HOM05D014625 ORTHO05D007630 1.5e-27 128.3 338 33.7
Gohir.D08G007350 Gossypium hirsutum HOM05D007641 ORTHO05D007630 9.9e-27 125.6 389 30.6
COL.COLO4_11217 Corchorus olitorius HOM05D007641 ORTHO05D007630 3.8e-26 123.6 230 35.7
GSVIVG01024555001 Vitis vinifera HOM05D007641 ORTHO05D007630 1.1e-25 122.1 285 36.1
Phvul.006G079400 Phaseolus vulgaris HOM05D007641 ORTHO05D007630 1.4e-25 121.7 350 32.6
PSO170G4823 Papaver somniferum HOM05D007641 ORTHO05D007630 9.3e-25 119.0 352 32.4
Carub.0004s1164 Capsella rubella HOM05D001940 ORTHO05D007630 1.6e-24 118.2 376 29.8
TAR636G3352 Trochodendron aralioides HOM05D007641 ORTHO05D007630 1.6e-24 118.2 148 46.6
Solyc09g005140.2 Solanum lycopersicum HOM05D014625 ORTHO05D007630 2.7e-24 117.5 339 32.7
Sed0007856 Sechium edule HOM05D007641 ORTHO05D007630 4.6e-24 116.7 346 30.3
Prupe.6G040800 Prunus persica HOM05D007641 ORTHO05D007630 6.0e-24 116.3 343 30.9
Ah.08g218910 Amaranthus hybridus HOM05D000020 ORTHO05D002192 5.1e-23 113.2 286 33.2
MELO3C019578.2 Cucumis melo HOM05D007641 ORTHO05D007630 6.6e-23 112.8 348 31.6
Hund18459 Selenicereus undatus HOM05D029401 ORTHO05D007630 3.3e-22 110.5 334 28.7
Ca_15061_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 1.8e-20 104.8 339 31.6
AT2G30480 Arabidopsis thaliana HOM05D001940 ORTHO05D007630 2.4e-20 104.4 386 28.0
HanXRQChr08g0230341 Helianthus annuus HOM05D007641 ORTHO05D007630 3.1e-20 104.0 329 28.9
AL4G25360 Arabidopsis lyrata HOM05D001940 ORTHO05D007630 6.9e-20 102.8 386 27.2
Gohir.D12G000401 Gossypium hirsutum HOM05D007641 ORTHO05D007630 1.5e-19 101.7 216 36.1
Rhsim01G0243500 Rhododendron simsii HOM05D007641 ORTHO05D007630 2.0e-19 101.3 241 35.7
THA.LOC104815825 Tarenaya hassleriana HOM05D001940 ORTHO05D007630 2.0e-19 101.3 342 28.4
TPR.G13882 Trifolium pratense HOM05D007641 ORTHO05D007630 2.0e-19 101.3 349 30.4
Haze_24474 Corylus avellana HOM05D007641 ORTHO05D007630 3.4e-19 100.5 121 47.9
AUR62001158 Chenopodium quinoa HOM05D029401 ORTHO05D007630 4.5e-19 100.1 311 33.1
Migut.D00817 Erythranthe guttata HOM05D007641 ORTHO05D007630 2.2e-18 97.8 339 27.7
PSO017G1347 Papaver somniferum HOM05D007641 ORTHO05D007630 8.4e-18 95.9 350 28.6
Os01g0167700 Oryza sativa ssp. japonica HOM05D052079 ORTHO05D007630 2.4e-17 94.4 347 28.5
Peaxi162Scf00605g00515 Petunia axillaris HOM05D014625 ORTHO05D007630 5.4e-17 93.2 297 30.0
Lj6g0005873 Lotus japonicus HOM05D007641 ORTHO05D007630 7.1e-17 92.8 344 29.9
C04p20070 Brassica napus HOM05D001940 ORTHO05D007630 1.2e-16 92.0 331 27.8
VMungo0540G0343 Vigna mungo HOM05D007641 ORTHO05D007630 1.6e-16 91.7 328 29.6
Nitab4.5_0001868g0030 Nicotiana tabacum HOM05D014625 ORTHO05D007630 2.7e-16 90.9 274 29.6
vmacro14640 Vaccinium macrocarpon HOM05D007641 ORTHO05D007630 3.5e-16 90.5 127 45.7
Lsat_1_v5_gn_9_13760 Lactuca sativa HOM05D007641 ORTHO05D007630 7.9e-16 89.4 342 27.8
Sp4g13010 Schrenkiella parvula HOM05D001940 ORTHO05D007630 7.9e-16 89.4 245 33.9
HPP92_015425 Vanilla planifolia HOM05D007641 ORTHO05D007630 7.9e-16 89.4 334 28.7
CSS0002773 Camellia sinensis var. sinensis HOM05D024992 ORTHO05D022110 1.3e-15 88.6 114 46.5
ATR1127G234 Amborella trichopoda HOM05D007641 ORTHO05D007630 1.8e-15 88.2 300 30.7
Sc23g0005090 Simmondsia chinensis HOM05D007641 ORTHO05D007630 2.3e-15 87.8 344 27.6
SGA_v2.0_scaffold20G09288 Striga asiatica HOM05D007641 ORTHO05D007630 6.7e-15 86.3 304 30.3
Gorai.002G184200 Gossypium raimondii HOM05D007641 ORTHO05D007630 5.6e-14 83.2 184 33.2
DCAR_018642 Daucus carota HOM05D007641 ORTHO05D007630 2.8e-13 80.9 144 38.2
BcaB02g10326 Brassica carinata HOM05D001940 ORTHO05D007630 8.1e-13 79.3 336 28.6
arahy.Tifrunner.gnm1.ann1.4PHV2I Arachis hypogaea HOM05D007641 ORTHO05D007630 2.4e-12 77.8 285 29.1
MBI15_g36478_MAGBIO Magnolia biondii HOM05D007641 ORTHO05D007630 2.4e-12 77.8 178 33.1
ECA247G3209 Erigeron canadensis HOM05D007641 ORTHO05D007630 4.0e-12 77.0 142 35.9
Lalb_Chr18g0054201 Lupinus albus HOM05D007641 ORTHO05D007630 1.2e-11 75.5 252 31.0
Nitab4.5_0000002g0280 Nicotiana tabacum HOM05D014625 ORTHO05D007630 5.8e-11 73.2 282 26.2
AUR62016518 Chenopodium quinoa HOM05D029401 ORTHO05D007630 8.4e-10 69.3 135 34.8
Medtr3g467390 Medicago truncatula HOM05D007641 ORTHO05D007630 8.4e-10 69.3 147 36.1
BcaC02g11137 Brassica carinata HOM05D001940 ORTHO05D007630 2.1e-08 64.7 249 30.5
Lalb_Chr18g0054191 Lupinus albus HOM05D007641 ORTHO05D007630 2.7e-08 64.3 57 59.6
Ca_22416_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 1.3e-07 62.0 73 52.1
A05p14980 Brassica napus HOM05D001940 ORTHO05D007630 2.3e-07 61.2 209 31.1
EL10Ac7g17950 Beta vulgaris HOM05D029401 ORTHO05D007630 8.7e-07 59.3 112 40.2
Gohir.D01G148301 Gossypium hirsutum HOM05D007641 ORTHO05D007630 1.9e-06 58.2 184 26.6
MD11G1053100 Malus domestica HOM05D007641 ORTHO05D022110 3.3e-06 57.4 96 39.6
Hma1.2p1_2487F.1_g323130 Hydrangea macrophylla HOM05D024992 ORTHO05D022110 4.3e-06 57.0 50 60.0


User provided reference genes

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