Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 4.3e-278 960.7 479 100.0
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 7.1e-132 474.9 377 65.5
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 2.1e-131 473.4 380 64.5
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 6.0e-131 471.9 377 65.3
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 1.0e-130 471.1 393 62.3
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 1.3e-130 470.7 425 59.5
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 3.3e-129 466.1 425 59.1
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 4.3e-129 465.7 381 64.0
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 5.6e-129 465.3 424 60.1
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 2.8e-128 463.0 425 57.6
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 1.1e-127 461.1 377 64.2
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 3.1e-127 459.5 424 57.3
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 3.1e-127 459.5 425 58.8
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 4.0e-127 459.1 392 62.5
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 5.3e-127 458.8 392 61.5
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 6.9e-127 458.4 425 58.4
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 6.9e-127 458.4 393 62.6
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 2.0e-126 456.8 425 58.1
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 2.6e-126 456.4 422 59.7
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 7.6e-126 454.9 425 57.6
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 7.6e-126 454.9 425 59.3
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 9.9e-126 454.5 397 62.2
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 1.3e-125 454.1 392 61.0
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 1.7e-125 453.8 392 61.5
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 2.9e-125 453.0 392 61.0
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 1.4e-124 450.7 425 56.5
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 1.9e-124 450.3 378 62.2
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 1.2e-123 447.6 424 57.1
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 2.7e-123 446.4 392 59.9
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 4.6e-123 445.7 391 58.8
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 4.6e-123 445.7 425 56.5
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 1.8e-122 443.7 398 60.3
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 8.7e-122 441.4 425 57.4
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 1.1e-121 441.0 425 57.4
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 1.1e-121 441.0 425 55.8
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.9e-121 440.3 392 58.4
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 3.3e-121 439.5 391 57.5
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 5.6e-121 438.7 391 58.3
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 7.4e-121 438.3 392 58.4
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 4.8e-120 435.6 391 58.1
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 4.8e-120 435.6 392 57.7
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 4.8e-120 435.6 374 59.4
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 1.1e-119 434.5 391 57.8
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 1.8e-119 433.7 425 56.2
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 3.1e-119 433.0 393 57.8
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 3.1e-119 433.0 393 57.8
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 4.0e-119 432.6 399 57.9
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 6.9e-119 431.8 377 58.9
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 9.0e-119 431.4 390 57.7
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 9.0e-119 431.4 390 57.7
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 9.0e-119 431.4 390 57.7
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 7.6e-118 428.3 377 59.2
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 1.3e-117 427.6 391 58.1
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 3.8e-117 426.0 391 57.8
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 6.5e-117 425.2 394 58.1
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 1.1e-116 424.5 403 57.6
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 2.5e-116 423.3 384 58.9
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 1.2e-115 421.0 394 56.9
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.2e-115 421.0 394 56.9
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.6e-115 420.6 394 56.9
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.1e-115 420.2 394 56.9
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 4.6e-115 419.1 394 56.6
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.0e-114 417.9 394 56.3
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 2.1e-112 410.2 392 57.1
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 9.0e-111 404.8 393 55.2
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 1.2e-110 404.4 377 57.0
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 2.0e-110 403.7 376 57.4
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 2.0e-110 403.7 393 56.7
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 2.6e-110 403.3 380 58.9
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 4.5e-110 402.5 398 55.3
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 1.7e-109 400.6 393 54.2
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.9e-109 399.8 377 57.3
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 1.1e-108 397.9 423 52.0
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 1.1e-108 397.9 393 53.9
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 1.4e-108 397.5 396 55.8
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 2.3e-106 390.2 395 56.2
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 3.9e-106 389.4 443 49.7
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 3.9e-106 389.4 395 55.7
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 1.2e-102 377.9 378 55.3
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 3.4e-102 376.3 391 53.5
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 3.8e-101 372.9 353 56.4
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 2.1e-99 367.1 474 46.4
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 2.5e-97 360.1 375 54.1
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 2.0e-86 323.9 314 53.2
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 3.8e-85 319.7 321 55.1
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 9.4e-84 315.1 400 45.5
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.2e-83 314.7 400 45.5
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 1.4e-82 311.2 391 45.8
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 8.8e-82 308.5 390 45.6
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 2.0e-78 297.4 252 60.3
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 9.8e-73 278.5 395 44.8
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 8.5e-69 265.4 195 67.2
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 6.1e-67 259.2 382 42.1
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 6.8e-66 255.8 191 62.3
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 2.0e-65 254.2 386 41.7
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.3e-64 251.5 191 61.3
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 2.4e-63 247.3 404 39.1
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 1.2e-57 228.4 394 38.6
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.3e-53 214.9 180 58.9
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 4.3e-52 209.9 409 36.9
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 9.5e-44 182.2 147 59.9
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 5.2e-42 176.4 267 39.3
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.2e-31 140.6 250 39.6
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 5.1e-29 133.3 124 57.3
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 2.2e-24 117.9 153 47.1
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 9.3e-23 112.5 71 77.5
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 3.9e-21 107.1 124 50.0
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 7.6e-17 92.8 69 63.8
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 1.5e-12 78.6 124 37.1
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 4.2e-07 60.5 34 82.4
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 7.1e-07 59.7 52 48.1
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 4.6e-06 57.0 37 59.5


User provided reference genes

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