Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 1.3e-38 162.5 78 100.0
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 2.6e-23 111.7 62 83.9
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 5.7e-23 110.5 62 80.6
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 5.7e-23 110.5 62 79.0
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 7.5e-23 110.2 62 79.0
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 7.5e-23 110.2 62 79.0
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 9.8e-23 109.8 62 79.0
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 9.8e-23 109.8 62 80.6
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 1.3e-22 109.4 62 79.0
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 1.7e-22 109.0 62 77.4
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.7e-22 109.0 62 77.4
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 6.3e-22 107.1 58 82.8
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.4e-21 105.9 58 81.0
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.8e-21 105.5 61 80.3
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 3.1e-21 104.8 62 75.8
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 4.1e-21 104.4 62 74.2
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 7.0e-21 103.6 61 77.0
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 2.0e-20 102.1 62 71.0
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 3.5e-20 101.3 62 72.6
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 3.5e-20 101.3 59 78.0
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 3.5e-20 101.3 59 78.0
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 3.5e-20 101.3 54 87.0
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 3.5e-20 101.3 56 82.1
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 4.5e-20 100.9 58 81.0
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 4.5e-20 100.9 62 71.0
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 7.7e-20 100.1 62 71.0
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 7.7e-20 100.1 62 72.6
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 1.0e-19 99.8 59 78.0
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 1.0e-19 99.8 56 82.1
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 1.0e-19 99.8 61 73.8
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 1.3e-19 99.4 62 69.4
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 1.3e-19 99.4 54 85.2
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 1.7e-19 99.0 56 80.4
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 2.3e-19 98.6 59 74.6
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 2.3e-19 98.6 62 71.0
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 2.3e-19 98.6 59 76.3
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.9e-19 98.2 56 78.6
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 2.9e-19 98.2 62 72.6
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 3.8e-19 97.8 59 76.3
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 5.0e-19 97.4 61 73.8
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 5.0e-19 97.4 54 79.6
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 6.6e-19 97.1 56 78.6
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 6.6e-19 97.1 59 74.6
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 6.6e-19 97.1 59 74.6
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 6.6e-19 97.1 62 67.7
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 6.6e-19 97.1 62 67.7
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 8.6e-19 96.7 59 74.6
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 8.6e-19 96.7 54 79.6
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 1.1e-18 96.3 62 71.0
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 1.1e-18 96.3 54 77.8
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 1.1e-18 96.3 56 78.6
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 1.5e-18 95.9 59 72.9
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 1.5e-18 95.9 59 74.6
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 1.5e-18 95.9 62 69.4
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 1.9e-18 95.5 54 79.6
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 1.9e-18 95.5 61 68.9
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 1.9e-18 95.5 61 72.1
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.5e-18 95.1 56 75.0
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 3.3e-18 94.7 53 79.2
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 3.3e-18 94.7 56 76.8
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.3e-18 94.7 62 69.4
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 3.3e-18 94.7 54 77.8
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 4.2e-18 94.4 62 67.7
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 4.2e-18 94.4 62 69.4
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 5.5e-18 94.0 59 72.9
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 5.5e-18 94.0 59 72.9
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 5.5e-18 94.0 59 72.9
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 5.5e-18 94.0 62 67.7
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 5.5e-18 94.0 62 69.4
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 7.2e-18 93.6 54 79.6
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 7.2e-18 93.6 56 76.8
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 9.5e-18 93.2 54 77.8
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 9.5e-18 93.2 60 68.3
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 1.2e-17 92.8 54 77.8
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.2e-17 92.8 62 67.7
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 1.2e-17 92.8 54 74.1
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 1.2e-17 92.8 54 79.6
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 1.6e-17 92.4 59 71.2
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 2.1e-17 92.0 56 73.2
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 2.1e-17 92.0 59 72.9
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 2.1e-17 92.0 59 71.2
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 2.8e-17 91.7 60 68.3
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 2.8e-17 91.7 60 68.3
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 2.8e-17 91.7 60 68.3
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 2.8e-17 91.7 54 77.8
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 3.6e-17 91.3 53 75.5
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 3.6e-17 91.3 62 67.7
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 3.6e-17 91.3 62 67.7
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 3.6e-17 91.3 62 67.7
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 3.6e-17 91.3 53 79.2
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 3.6e-17 91.3 54 74.1
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 4.7e-17 90.9 54 74.1
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 6.1e-17 90.5 62 66.1
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 6.1e-17 90.5 54 75.9
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 8.0e-17 90.1 53 77.4
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 1.0e-16 89.7 60 66.7
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.0e-16 89.7 60 66.7
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 1.0e-16 89.7 59 67.8
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.4e-16 89.4 60 65.0
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.4e-16 89.4 60 65.0
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 2.3e-16 88.6 59 67.8
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 2.3e-16 88.6 59 67.8
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 3.0e-16 88.2 60 65.0
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 3.0e-16 88.2 61 63.9
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 5.2e-16 87.4 62 64.5
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 1.2e-15 86.3 54 72.2
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 2.0e-15 85.5 48 81.2
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 2.0e-15 85.5 59 66.1
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.0e-15 85.5 60 63.3
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 4.4e-15 84.3 54 72.2
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 5.7e-15 84.0 57 70.2
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 1.3e-14 82.8 56 66.1
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 8.3e-14 80.1 55 65.5
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.2e-13 78.2 54 64.8
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 4.1e-13 77.8 52 67.3
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 5.9e-12 73.9 47 74.5
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 5.9e-12 73.9 51 64.7
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.3e-11 72.8 54 57.4
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 2.3e-11 72.0 53 60.4
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 2.9e-11 71.6 55 61.8
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.9e-11 71.6 53 62.3
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.5e-10 68.6 53 58.5
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 9.5e-10 66.6 53 56.6
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 9.5e-10 66.6 53 56.6
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 1.0e-08 63.2 39 76.9
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 1.4e-08 62.8 43 72.1
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 1.3e-06 56.2 54 48.1


User provided reference genes

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