Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 0.0e+00 1138.3 571 100.0
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 4.9e-281 970.7 580 82.9
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 2.8e-276 954.9 580 82.9
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 2.7e-271 938.3 580 82.2
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 7.9e-271 936.8 581 80.7
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 4.3e-269 931.0 581 79.9
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 4.3e-269 931.0 581 79.9
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 2.4e-267 925.2 581 80.4
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 4.0e-267 924.5 581 80.4
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 4.5e-266 921.0 581 79.5
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 1.9e-264 915.6 580 79.8
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 2.1e-263 912.1 581 79.3
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 2.7e-263 911.8 581 79.2
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 2.7e-263 911.8 581 79.3
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 3.5e-263 911.4 581 79.2
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 1.1e-261 906.4 581 78.1
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 5.6e-261 904.0 581 77.8
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.4e-259 898.7 581 78.0
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 3.1e-259 898.3 581 76.8
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 2.0e-258 895.6 590 76.8
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 1.0e-257 893.3 581 76.4
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 1.0e-257 893.3 581 78.0
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 1.0e-257 893.3 583 77.7
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 2.2e-257 892.1 575 77.6
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 2.9e-257 891.7 581 78.0
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 6.5e-257 890.6 581 77.3
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 7.1e-256 887.1 581 76.1
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 2.7e-255 885.2 582 77.3
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 3.0e-254 881.7 586 75.1
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 2.5e-253 878.6 581 76.6
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 2.8e-252 875.2 581 76.1
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 2.4e-251 872.1 555 78.0
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 1.2e-250 869.8 583 75.1
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 2.0e-250 869.0 587 75.3
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 3.8e-249 864.8 569 78.4
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 8.5e-249 863.6 583 75.6
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 1.1e-248 863.2 581 76.4
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 3.2e-248 861.7 583 74.6
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 6.1e-247 857.4 583 74.3
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 6.7e-246 854.0 581 75.0
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 1.7e-244 849.4 583 74.3
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 5.0e-241 837.8 584 73.3
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 1.1e-240 836.6 587 71.6
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 1.4e-240 836.3 581 72.3
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 5.5e-240 834.3 583 72.7
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 3.9e-238 828.2 585 72.1
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 2.6e-237 825.5 585 70.6
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.6e-237 825.5 595 70.4
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 3.3e-237 825.1 581 71.3
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 9.7e-237 823.5 580 72.8
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 1.4e-235 819.7 584 71.2
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 1.4e-235 819.7 581 71.1
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 5.3e-235 817.8 583 71.5
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.2e-233 812.4 599 69.1
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 3.8e-233 811.6 582 71.3
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 8.5e-233 810.4 585 69.6
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 1.1e-232 810.1 585 69.4
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 3.2e-232 808.5 573 73.5
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 5.5e-232 807.7 566 72.6
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 1.3e-228 796.6 556 73.4
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 6.3e-228 794.3 678 61.7
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 3.5e-226 788.5 586 68.9
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 1.5e-224 783.1 590 69.0
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 1.9e-224 782.7 582 67.7
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 7.2e-224 780.8 589 68.1
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 7.2e-224 780.8 583 69.1
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 1.5e-221 773.1 589 68.3
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 1.5e-221 773.1 557 71.1
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 8.3e-220 767.3 578 68.5
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 2.9e-217 758.8 588 68.0
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 3.6e-215 751.9 581 66.8
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 2.3e-214 749.2 588 66.7
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.2e-213 746.9 581 67.3
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 4.8e-212 741.5 577 66.4
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 9.1e-211 737.3 465 79.1
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.2e-210 736.9 465 78.9
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 1.6e-210 736.5 491 76.2
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 3.3e-208 728.8 583 66.2
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 9.5e-208 727.2 589 62.8
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 3.4e-205 718.8 578 65.6
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 4.4e-205 718.4 578 65.6
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 4.4e-205 718.4 589 62.1
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 9.2e-203 710.7 586 65.9
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 1.7e-201 706.4 587 62.0
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 1.1e-200 703.7 577 63.1
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 5.6e-200 701.4 578 64.4
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 2.8e-199 699.1 581 62.0
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 6.1e-199 698.0 642 58.9
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 1.4e-198 696.8 579 63.6
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 9.8e-197 690.6 561 64.5
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 1.3e-196 690.3 561 64.0
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 7.0e-195 684.5 578 62.5
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 1.2e-194 683.7 583 61.4
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 7.8e-194 681.0 583 61.6
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 5.6e-192 674.9 583 60.0
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 2.8e-191 672.5 422 78.4
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 2.8e-191 672.5 587 62.4
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 3.9e-185 652.1 581 59.0
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 2.8e-183 646.0 581 58.5
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 2.8e-183 646.0 413 78.0
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 3.5e-178 629.0 486 67.3
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 2.1e-175 619.8 429 74.8
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 8.1e-175 617.8 361 86.4
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.4e-174 617.1 597 55.3
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 2.3e-169 599.7 413 73.6
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 6.5e-140 501.9 455 56.7
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 6.9e-126 455.3 374 63.9
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 2.3e-121 440.3 616 41.9
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 1.6e-114 417.5 607 41.0
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 1.6e-109 401.0 495 49.5
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 2.7e-98 363.6 245 73.5
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 8.0e-98 362.1 554 42.8
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 2.0e-93 347.4 220 77.7
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 2.1e-90 337.4 619 34.9
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.9e-67 261.2 142 85.9
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 4.3e-67 260.0 142 89.4
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 1.5e-56 224.9 124 87.9
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 9.3e-46 189.1 96 95.8
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 2.1e-26 124.8 92 68.5
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 3.7e-26 124.0 92 67.4
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 5.5e-14 83.6 106 45.3
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 5.5e-14 83.6 62 59.7
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 6.7e-12 76.6 173 37.6
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 5.0e-07 60.5 70 50.0


User provided reference genes

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