Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.2 Carica papaya HOM05D001182 ORTHO05D008051 4.6e-115 417.9 214 100.0
QL11p000326 Quercus lobata HOM05D001182 ORTHO05D008051 5.8e-17 92.0 217 32.3
Haze_01650 Corylus avellana HOM05D001182 ORTHO05D008051 1.9e-15 87.0 217 34.6
COL.COLO4_17880 Corchorus olitorius HOM05D003483 ORTHO05D004101 7.8e-14 81.6 60 61.7
Duzib132G0224 Durio zibethinus HOM05D001182 ORTHO05D008051 7.8e-14 81.6 98 44.9
CiPaw.06G148200 Carya illinoinensis HOM05D001182 ORTHO05D008051 2.3e-13 80.1 217 29.5
Thecc.02G039700 Theobroma cacao HOM05D001182 ORTHO05D008051 2.3e-13 80.1 87 47.1
Gorai.002G209500 Gossypium raimondii HOM05D001182 ORTHO05D008051 3.0e-13 79.7 104 44.2
Gohir.A01G177900 Gossypium hirsutum HOM05D001182 ORTHO05D008051 6.6e-13 78.6 104 44.2
Gohir.D01G168700 Gossypium hirsutum HOM05D001182 ORTHO05D008051 6.6e-13 78.6 106 46.2
RcHm_v2.0_Chr7g0222711 Rosa chinensis HOM05D001182 ORTHO05D008051 6.6e-13 78.6 89 51.7
Atru.chr6.839_Atru.chr6.840 Acer truncatum HOM05D001182 ORTHO05D008051 8.6e-13 78.2 217 31.3
Manes.07G014700 Manihot esculenta HOM05D001182 ORTHO05D008051 1.1e-12 77.8 217 29.0
MD15G1421600 Malus domestica HOM05D001182 ORTHO05D008051 1.5e-12 77.4 58 62.1
Prupe.1G566800 Prunus persica HOM05D001182 ORTHO05D008051 1.5e-12 77.4 105 48.6
Cfa005531 Carpinus fangiana HOM05D001182 ORTHO05D008051 3.3e-12 76.3 211 28.9
FAN04G2731 Fragaria x ananassa HOM05D001182 ORTHO05D008051 5.6e-12 75.5 58 58.6
FAN08G2833 Fragaria x ananassa HOM05D001182 ORTHO05D008051 1.6e-11 73.9 54 63.0
Nn1g08676 Nelumbo nucifera HOM05D001182 ORTHO05D008051 1.6e-11 73.9 58 55.2
FvH4_5g29650 Fragaria vesca HOM05D001182 ORTHO05D008051 2.8e-11 73.2 88 46.6
TAR628G0505 Trochodendron aralioides HOM05D001182 ORTHO05D008051 2.8e-11 73.2 58 55.2
vmacro01766 Vaccinium macrocarpon HOM05D001182 ORTHO05D008051 3.6e-11 72.8 54 61.1
Gohir.A03G211100 Gossypium hirsutum HOM05D001182 ORTHO05D008051 1.1e-10 71.2 224 29.9
Gohir.D02G232700 Gossypium hirsutum HOM05D001182 ORTHO05D008051 1.1e-10 71.2 224 29.9
Potri.001G210200 Populus trichocarpa HOM05D001182 ORTHO05D008051 1.8e-10 70.5 62 56.5
Rhsim11G0130000 Rhododendron simsii HOM05D001182 ORTHO05D008051 1.8e-10 70.5 58 55.2
Sabra01G0162400 Salix brachista HOM05D001182 ORTHO05D008051 1.8e-10 70.5 62 58.1
GSVIVG01022994001 Vitis vinifera HOM05D001182 ORTHO05D008051 1.8e-10 70.5 82 43.9
Gorai.005G260500 Gossypium raimondii HOM05D001182 ORTHO05D008051 2.4e-10 70.1 224 29.5
CSS0017219 Camellia sinensis var. sinensis HOM05D001182 ORTHO05D008051 3.1e-10 69.7 72 50.0
MBI09_g06383_MAGBIO Magnolia biondii HOM05D001182 ORTHO05D008051 6.9e-10 68.6 83 42.2
Psat1g224520 Pisum sativum HOM05D001182 ORTHO05D008051 8.9e-10 68.2 54 59.3
MD08G1227800 Malus domestica HOM05D001182 ORTHO05D008051 1.2e-09 67.8 59 57.6
Dinv19358 Davidia involucrata HOM05D001182 ORTHO05D008051 2.6e-09 66.6 58 51.7
TWI14G1019 Tripterygium wilfordii HOM05D001182 ORTHO05D008051 4.4e-09 65.9 214 29.0
Ca_00081_v3 Cicer arietinum L. HOM05D001182 ORTHO05D008051 7.6e-09 65.1 58 53.4
Lj9A307T42 Lonicera japonica HOM05D001182 ORTHO05D008051 9.9e-09 64.7 59 54.2
Dinv24265 Davidia involucrata HOM05D001182 ORTHO05D008051 2.2e-08 63.5 58 48.3
Glyma.08G185700 Glycine max HOM05D001182 ORTHO05D008051 2.2e-08 63.5 58 51.7
Medtr2g007330 Medicago truncatula HOM05D001182 ORTHO05D008051 2.2e-08 63.5 54 55.6
Aqoxy5G02433 Aquilegia oxysepala HOM05D001182 ORTHO05D008051 3.8e-08 62.8 58 43.1
Glyma.15G047100 Glycine max HOM05D001182 ORTHO05D008051 4.9e-08 62.4 214 26.6
VMungo0540G0659 Vigna mungo HOM05D001182 ORTHO05D008051 6.4e-08 62.0 58 51.7
Nitab4.5_0002245g0160 Nicotiana tabacum HOM05D001182 ORTHO05D008051 8.4e-08 61.6 60 50.0
CANSAT54G1880 Cannabis sativa HOM05D001182 ORTHO05D008051 1.1e-07 61.2 54 55.6
Glyma.01G123700 Glycine max HOM05D001182 ORTHO05D008051 1.1e-07 61.2 54 53.7
Nitab4.5_0011195g0030 Nicotiana tabacum HOM05D001182 ORTHO05D008051 1.1e-07 61.2 53 54.7
PGR042G0576 Punica granatum HOM05D001182 ORTHO05D008051 1.9e-07 60.5 58 44.8
Lalb_Chr15g0090641 Lupinus albus HOM05D001182 ORTHO05D008051 3.2e-07 59.7 58 44.8
TPR.G2100 Trifolium pratense HOM05D001182 ORTHO05D008051 3.2e-07 59.7 54 53.7
CAN.G1577.8 Capsicum annuum HOM05D001182 ORTHO05D008051 5.4e-07 58.9 58 44.8
SalBow6G4578 Salvia bowleyana HOM05D001182 ORTHO05D008051 7.1e-07 58.5 58 41.4
SalBow6G5030 Salvia bowleyana HOM05D001182 ORTHO05D008051 7.1e-07 58.5 58 41.4
Cc02_g22390 Coffea canephora HOM05D001182 ORTHO05D008051 9.3e-07 58.2 66 48.5
Hma1.2p1_0557F.1_g178390 Hydrangea macrophylla HOM05D001182 ORTHO05D008051 9.3e-07 58.2 53 47.2
Oeu008885.2 Olea europaea HOM05D001182 ORTHO05D008051 1.6e-06 57.4 58 39.7
Solyc01g104300.3 Solanum lycopersicum HOM05D001182 ORTHO05D008051 2.1e-06 57.0 58 43.1
Sopen01g046740 Solanum pennellii HOM05D001182 ORTHO05D008051 2.1e-06 57.0 58 43.1
ATR0584G139 Amborella trichopoda HOM05D001182 ORTHO05D008051 2.7e-06 56.6 51 47.1
arahy.Tifrunner.gnm1.ann1.UK23IF Arachis hypogaea HOM05D001182 ORTHO05D008051 2.7e-06 56.6 58 44.8
Thhalv10018126m.g Eutrema salsugineum HOM05D001182 ORTHO05D008051 2.7e-06 56.6 58 41.4
THA.LOC104800080 Tarenaya hassleriana HOM05D001182 ORTHO05D008051 2.7e-06 56.6 54 46.3
Aa31LG4G9270 Aethionema arabicum HOM05D001182 ORTHO05D008051 3.5e-06 56.2 58 41.4
arahy.Tifrunner.gnm1.ann1.SMR6SK Arachis hypogaea HOM05D001182 ORTHO05D008051 3.5e-06 56.2 58 44.8
Sp5g26440 Schrenkiella parvula HOM05D001182 ORTHO05D008051 3.5e-06 56.2 58 41.4
ECA234G2900 Erigeron canadensis HOM05D001182 ORTHO05D008051 4.6e-06 55.8 90 33.3
Actinidia00212 Actinidia chinensis HOM05D001182 ORTHO05D008051 7.8e-06 55.1 45 55.6
BolC6t39592H Brassica oleracea HOM05D001182 ORTHO05D008051 7.8e-06 55.1 83 36.1
SGA_v2.0_scaffold145G36071 Striga asiatica HOM05D001182 ORTHO05D008051 7.8e-06 55.1 58 39.7


User provided reference genes

Program Settings