Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.1 Carica papaya HOM05D001182 ORTHO05D008051 6.5e-18 92.8 41 100.0
Hma1.2p1_0557F.1_g178390 Hydrangea macrophylla HOM05D001182 ORTHO05D008051 1.1e-12 75.5 41 82.9
Rhsim11G0130000 Rhododendron simsii HOM05D001182 ORTHO05D008051 1.8e-12 74.7 41 80.5
vmacro01766 Vaccinium macrocarpon HOM05D001182 ORTHO05D008051 1.8e-12 74.7 41 82.9
CiPaw.06G148200 Carya illinoinensis HOM05D001182 ORTHO05D008051 2.4e-12 74.3 41 78.0
MD08G1227800 Malus domestica HOM05D001182 ORTHO05D008051 2.4e-12 74.3 41 80.5
Lj9A307T42 Lonicera japonica HOM05D001182 ORTHO05D008051 3.1e-12 73.9 41 85.4
RcHm_v2.0_Chr7g0222711 Rosa chinensis HOM05D001182 ORTHO05D008051 3.1e-12 73.9 41 78.0
MD15G1421600 Malus domestica HOM05D001182 ORTHO05D008051 4.1e-12 73.6 41 80.5
CSS0017219 Camellia sinensis var. sinensis HOM05D001182 ORTHO05D008051 5.3e-12 73.2 41 80.5
Dinv24265 Davidia involucrata HOM05D001182 ORTHO05D008051 5.3e-12 73.2 41 80.5
Cfa005531 Carpinus fangiana HOM05D001182 ORTHO05D008051 9.1e-12 72.4 41 80.5
GSVIVG01022994001 Vitis vinifera HOM05D001182 ORTHO05D008051 9.1e-12 72.4 41 78.0
Psat1g224520 Pisum sativum HOM05D001182 ORTHO05D008051 1.2e-11 72.0 41 73.2
QL11p000326 Quercus lobata HOM05D001182 ORTHO05D008051 1.2e-11 72.0 41 80.5
Glyma.08G185700 Glycine max HOM05D001182 ORTHO05D008051 1.6e-11 71.6 41 75.6
TPR.G2100 Trifolium pratense HOM05D001182 ORTHO05D008051 1.6e-11 71.6 41 73.2
FvH4_5g29650 Fragaria vesca HOM05D001182 ORTHO05D008051 2.0e-11 71.2 41 78.0
Medtr2g007330 Medicago truncatula HOM05D001182 ORTHO05D008051 2.0e-11 71.2 41 70.7
Prupe.1G566800 Prunus persica HOM05D001182 ORTHO05D008051 2.0e-11 71.2 41 78.0
Actinidia00212 Actinidia chinensis HOM05D001182 ORTHO05D008051 2.6e-11 70.9 41 80.5
CANSAT54G1880 Cannabis sativa HOM05D001182 ORTHO05D008051 2.6e-11 70.9 41 75.6
Ciclev10000484m.g Citrus clementina HOM05D001182 ORTHO05D008051 3.5e-11 70.5 38 81.6
Dinv19358 Davidia involucrata HOM05D001182 ORTHO05D008051 3.5e-11 70.5 41 80.5
Gohir.A01G177900 Gossypium hirsutum HOM05D001182 ORTHO05D008051 3.5e-11 70.5 41 75.6
Lj6g0002068 Lotus japonicus HOM05D001182 ORTHO05D008051 3.5e-11 70.5 41 70.7
PGR042G0576 Punica granatum HOM05D001182 ORTHO05D008051 3.5e-11 70.5 41 73.2
unitig_52.g17436 Utricularia gibba HOM05D001182 ORTHO05D008051 3.5e-11 70.5 41 70.7
Duzib132G0224 Durio zibethinus HOM05D001182 ORTHO05D008051 4.5e-11 70.1 41 75.6
Gohir.D01G168700 Gossypium hirsutum HOM05D001182 ORTHO05D008051 4.5e-11 70.1 41 75.6
Gorai.002G209500 Gossypium raimondii HOM05D001182 ORTHO05D008051 4.5e-11 70.1 41 75.6
HanXRQChr03g0066821 Helianthus annuus HOM05D001182 ORTHO05D008051 4.5e-11 70.1 41 78.0
Lalb_Chr15g0090641 Lupinus albus HOM05D001182 ORTHO05D008051 4.5e-11 70.1 41 73.2
Nn1g08676 Nelumbo nucifera HOM05D001182 ORTHO05D008051 4.5e-11 70.1 41 78.0
Glyma.15G047100 Glycine max HOM05D001182 ORTHO05D008051 5.9e-11 69.7 41 73.2
Manes.07G014700 Manihot esculenta HOM05D001182 ORTHO05D008051 5.9e-11 69.7 41 78.0
SGA_v2.0_scaffold145G36071 Striga asiatica HOM05D001182 ORTHO05D008051 5.9e-11 69.7 41 73.2
Haze_01650 Corylus avellana HOM05D001182 ORTHO05D008051 7.7e-11 69.3 41 75.6
FAN04G2731 Fragaria x ananassa HOM05D001182 ORTHO05D008051 7.7e-11 69.3 41 75.6
FAN08G2833 Fragaria x ananassa HOM05D001182 ORTHO05D008051 7.7e-11 69.3 41 75.6
Phvul.006G214050 Phaseolus vulgaris HOM05D001182 ORTHO05D008051 7.7e-11 69.3 41 75.6
VMungo0540G0659 Vigna mungo HOM05D001182 ORTHO05D008051 7.7e-11 69.3 41 75.6
COL.COLO4_17880 Corchorus olitorius HOM05D003483 ORTHO05D004101 1.0e-10 68.9 41 73.2
Lsat_1_v5_gn_9_118280 Lactuca sativa HOM05D001182 ORTHO05D008051 1.0e-10 68.9 41 78.0
Thecc.02G039700 Theobroma cacao HOM05D001182 ORTHO05D008051 1.0e-10 68.9 41 73.2
Sopen01g046740 Solanum pennellii HOM05D001182 ORTHO05D008051 1.3e-10 68.6 41 73.2
MSTRG.5232 Avicennia marina HOM05D001182 ORTHO05D008051 1.7e-10 68.2 41 70.7
Cc02_g22390 Coffea canephora HOM05D001182 ORTHO05D008051 1.7e-10 68.2 41 70.7
Atru.chr6.839_Atru.chr6.840 Acer truncatum HOM05D001182 ORTHO05D008051 2.2e-10 67.8 41 73.2
ClCG09G013930 Citrullus lanatus HOM05D001182 ORTHO05D008051 2.2e-10 67.8 40 77.5
MELO3C010089.2 Cucumis melo HOM05D001182 ORTHO05D008051 2.2e-10 67.8 40 77.5
ECA240G2723 Erigeron canadensis HOM05D001182 ORTHO05D008051 2.2e-10 67.8 41 78.0
arahy.Tifrunner.gnm1.ann1.SMR6SK Arachis hypogaea HOM05D001182 ORTHO05D008051 2.9e-10 67.4 41 73.2
CsaV3_1G044980 Cucumis sativus L. HOM05D001182 ORTHO05D008051 2.9e-10 67.4 40 75.0
Carub.0002s1812 Capsella rubella HOM05D001182 ORTHO05D008051 3.8e-10 67.0 41 73.2
Peaxi162Scf00011g00358 Petunia axillaris HOM05D001182 ORTHO05D008051 3.8e-10 67.0 41 68.3
CAN.G1577.8 Capsicum annuum HOM05D001182 ORTHO05D008051 5.0e-10 66.6 41 70.7
AUR62015048 Chenopodium quinoa HOM05D001182 ORTHO05D008051 5.0e-10 66.6 41 68.3
AUR62017507 Chenopodium quinoa HOM05D001182 ORTHO05D008051 5.0e-10 66.6 41 68.3
SalBow6G5030 Salvia bowleyana HOM05D001182 ORTHO05D008051 5.0e-10 66.6 41 70.7
TAR628G0505 Trochodendron aralioides HOM05D001182 ORTHO05D008051 5.0e-10 66.6 41 75.6
arahy.Tifrunner.gnm1.ann1.UK23IF Arachis hypogaea HOM05D001182 ORTHO05D008051 6.5e-10 66.2 41 70.7
Migut.N01040 Erythranthe guttata HOM05D001182 ORTHO05D008051 8.5e-10 65.9 41 70.7
PSO017G4704 Papaver somniferum HOM05D001182 ORTHO05D008051 1.1e-09 65.5 41 70.7
PSO170G3364 Papaver somniferum HOM05D001182 ORTHO05D008051 1.1e-09 65.5 41 70.7
SalBow6G4578 Salvia bowleyana HOM05D001182 ORTHO05D008051 1.1e-09 65.5 41 68.3
Gohir.A03G211100 Gossypium hirsutum HOM05D001182 ORTHO05D008051 1.5e-09 65.1 41 65.9
Gohir.D02G232700 Gossypium hirsutum HOM05D001182 ORTHO05D008051 1.5e-09 65.1 41 65.9
Gorai.005G260500 Gossypium raimondii HOM05D001182 ORTHO05D008051 1.5e-09 65.1 41 65.9
Sed0008850 Sechium edule HOM05D001182 ORTHO05D008051 1.5e-09 65.1 40 72.5
Nitab4.5_0002245g0160 Nicotiana tabacum HOM05D001182 ORTHO05D008051 1.9e-09 64.7 41 70.7
TWI14G1019 Tripterygium wilfordii HOM05D001182 ORTHO05D008051 1.9e-09 64.7 41 75.6
Ca_00081_v3 Cicer arietinum L. HOM05D001182 ORTHO05D008051 2.5e-09 64.3 41 65.9
MBI09_g06383_MAGBIO Magnolia biondii HOM05D001182 ORTHO05D008051 2.5e-09 64.3 41 68.3
Potri.001G210200 Populus trichocarpa HOM05D001182 ORTHO05D008051 2.5e-09 64.3 38 78.9
Sc21g0000760 Simmondsia chinensis HOM05D001182 ORTHO05D008051 2.5e-09 64.3 41 68.3
Nitab4.5_0011195g0030 Nicotiana tabacum HOM05D001182 ORTHO05D008051 3.2e-09 63.9 41 68.3
Oeu008885.2 Olea europaea HOM05D001182 ORTHO05D008051 4.2e-09 63.5 41 65.9
Sabra01G0162400 Salix brachista HOM05D001182 ORTHO05D008051 4.2e-09 63.5 38 78.9
CDE04G0254 Ceratophyllum demersum HOM05D001182 ORTHO05D008051 5.5e-09 63.2 41 63.4
Solyc01g104300.3 Solanum lycopersicum HOM05D001182 ORTHO05D008051 5.5e-09 63.2 41 68.3
ATR0584G139 Amborella trichopoda HOM05D001182 ORTHO05D008051 7.2e-09 62.8 41 65.9
Ah.01g002710 Amaranthus hybridus HOM05D001182 ORTHO05D008051 1.2e-08 62.0 38 65.8
Os01g0869000 Oryza sativa ssp. japonica HOM05D001182 ORTHO05D008051 1.2e-08 62.0 38 65.8
HanXRQChr16g0513941 Helianthus annuus HOM05D001182 ORTHO05D008051 1.6e-08 61.6 37 73.0
Lsat_1_v5_gn_5_109401 Lactuca sativa HOM05D001182 ORTHO05D008051 2.7e-08 60.8 41 65.9
THA.LOC104800080 Tarenaya hassleriana HOM05D001182 ORTHO05D008051 2.7e-08 60.8 41 68.3
Aa31LG4G9270 Aethionema arabicum HOM05D001182 ORTHO05D008051 3.6e-08 60.5 38 71.1
AL2G30850 Arabidopsis lyrata HOM05D001182 ORTHO05D008051 4.7e-08 60.1 41 68.3
AT1G71240 Arabidopsis thaliana HOM05D001182 ORTHO05D008051 8.0e-08 59.3 41 65.9
BcaB03g14882 Brassica carinata HOM05D001182 ORTHO05D008051 8.0e-08 59.3 41 65.9
BcaC08g46560 Brassica carinata HOM05D001182 ORTHO05D008051 8.0e-08 59.3 41 65.9
A07p37600 Brassica napus HOM05D001182 ORTHO05D008051 8.0e-08 59.3 41 65.9
BraA07t31321Z Brassica rapa HOM05D001182 ORTHO05D008051 8.0e-08 59.3 41 65.9
HPP92_001083 Vanilla planifolia HOM05D001182 ORTHO05D008051 8.0e-08 59.3 41 61.0
ECA234G2900 Erigeron canadensis HOM05D001182 ORTHO05D008051 1.0e-07 58.9 41 63.4
Thhalv10018126m.g Eutrema salsugineum HOM05D001182 ORTHO05D008051 1.0e-07 58.9 41 65.9
C06p45360 Brassica napus HOM05D001182 ORTHO05D008051 1.4e-07 58.5 41 65.9
BolC6t39592H Brassica oleracea HOM05D001182 ORTHO05D008051 2.3e-07 57.8 41 63.4
Sp5g26440 Schrenkiella parvula HOM05D001182 ORTHO05D008051 8.8e-07 55.8 41 61.0
Aqoxy5G02433 Aquilegia oxysepala HOM05D001182 ORTHO05D008051 1.1e-06 55.5 41 70.7


User provided reference genes

Program Settings