Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 6.7e-136 487.3 233 100.0
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.5e-114 416.4 263 76.8
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 4.2e-114 414.8 259 77.6
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 5.5e-114 414.5 261 78.9
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.2e-113 413.3 261 77.4
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 4.7e-113 411.4 263 76.0
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.0e-112 410.2 263 76.0
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 1.8e-112 409.5 251 78.9
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 2.3e-112 409.1 261 76.6
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 3.0e-112 408.7 263 75.3
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 5.2e-112 407.9 261 76.6
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 6.8e-112 407.5 261 75.9
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 1.2e-111 406.8 263 76.0
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.5e-111 406.4 263 75.7
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.5e-111 406.4 261 75.5
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 2.0e-111 406.0 263 74.9
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 2.6e-111 405.6 262 75.2
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 3.4e-111 405.2 263 74.5
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 5.7e-111 404.4 262 75.6
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 7.5e-111 404.1 263 76.4
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 9.8e-111 403.7 263 74.9
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 9.8e-111 403.7 263 74.9
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 9.8e-111 403.7 263 74.5
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.3e-110 403.3 263 74.5
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.7e-110 402.9 261 74.7
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.2e-110 402.5 263 74.5
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 2.2e-110 402.5 263 74.5
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 2.8e-110 402.1 261 74.3
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 3.7e-110 401.7 261 74.7
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 4.9e-110 401.4 263 74.5
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 8.3e-110 400.6 261 74.7
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.4e-109 399.8 263 74.1
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.4e-109 399.8 263 74.1
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 1.8e-109 399.4 261 73.6
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 2.4e-109 399.1 261 74.7
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 3.1e-109 398.7 261 73.9
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 4.1e-109 398.3 263 73.8
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 4.1e-109 398.3 263 73.8
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 4.1e-109 398.3 263 73.4
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 5.4e-109 397.9 261 74.7
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 7.0e-109 397.5 263 73.8
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 1.2e-108 396.7 263 73.4
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 1.2e-108 396.7 261 72.4
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.6e-108 396.4 263 72.6
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 3.5e-108 395.2 263 73.4
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 3.5e-108 395.2 289 68.2
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 5.9e-108 394.4 263 72.6
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 5.9e-108 394.4 261 72.8
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 5.9e-108 394.4 263 73.0
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 7.8e-108 394.0 263 73.0
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 1.0e-107 393.7 262 73.3
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 1.0e-107 393.7 263 72.2
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 1.3e-107 393.3 263 72.6
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 1.7e-107 392.9 262 72.9
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 2.3e-107 392.5 262 73.3
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 2.9e-107 392.1 258 70.9
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 2.9e-107 392.1 262 72.1
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 2.9e-107 392.1 263 72.6
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 5.0e-107 391.3 261 72.0
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 5.0e-107 391.3 263 72.6
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 6.6e-107 391.0 263 72.6
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 6.6e-107 391.0 263 73.0
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 8.6e-107 390.6 263 72.6
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 1.1e-106 390.2 263 73.0
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.1e-106 390.2 263 72.6
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.1e-106 390.2 261 72.4
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.1e-106 390.2 262 72.9
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 1.5e-106 389.8 263 72.2
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-106 389.4 263 71.9
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.9e-106 389.4 300 66.0
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.9e-106 389.4 284 68.7
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.9e-106 389.4 261 71.6
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 2.5e-106 389.0 279 68.5
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 2.5e-106 389.0 263 71.9
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 4.3e-106 388.3 263 71.5
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 4.3e-106 388.3 263 71.1
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 4.3e-106 388.3 263 72.2
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 5.6e-106 387.9 263 71.9
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 5.6e-106 387.9 262 72.1
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 7.3e-106 387.5 262 72.5
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 7.3e-106 387.5 266 72.2
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 7.3e-106 387.5 261 71.3
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 7.3e-106 387.5 287 67.9
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 1.6e-105 386.3 276 70.3
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 1.6e-105 386.3 263 72.2
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 2.1e-105 386.0 263 71.9
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 3.6e-105 385.2 261 71.6
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 3.6e-105 385.2 262 71.0
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 3.6e-105 385.2 261 71.6
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 4.7e-105 384.8 263 72.2
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 1.0e-104 383.6 266 71.4
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 1.0e-104 383.6 261 71.6
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 4.0e-104 381.7 261 70.1
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 5.2e-104 381.3 261 71.6
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 6.8e-104 380.9 261 68.6
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 8.9e-104 380.6 262 70.2
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 1.2e-103 380.2 268 70.1
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 1.2e-103 380.2 263 70.0
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 4.4e-103 378.3 263 70.0
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 4.4e-103 378.3 257 71.2
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.7e-102 376.3 261 68.6
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.4e-101 373.2 261 69.3
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 2.4e-101 372.5 217 82.9
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 3.9e-99 365.2 279 65.6
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 5.0e-99 364.8 262 69.5
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 8.6e-99 364.0 250 72.4
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.5e-98 363.2 245 71.4
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 2.5e-98 362.5 227 77.1
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 7.3e-98 360.9 263 69.6
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 9.5e-98 360.5 243 72.0
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 3.7e-94 348.6 227 72.7
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 1.9e-93 346.3 270 66.3
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 1.9e-93 346.3 270 66.3
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.4e-93 345.9 235 71.5
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 4.1e-93 345.1 270 66.3
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.2e-92 343.6 262 65.3
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.6e-92 343.2 262 63.0
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 2.7e-92 342.4 224 73.2
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 8.6e-91 337.4 259 61.4
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-90 336.7 263 65.0
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 4.3e-90 335.1 224 71.9
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 4.3e-90 335.1 224 71.9
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 4.3e-90 335.1 261 61.7
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 3.1e-88 328.9 259 61.4
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 2.9e-86 322.4 262 63.7
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 4.1e-85 318.5 262 58.8
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 4.0e-80 302.0 227 65.6
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.9e-78 295.8 257 54.1
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 8.1e-73 277.7 258 51.6
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 3.1e-72 275.8 191 71.2
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 9.3e-69 264.2 237 53.6
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 9.3e-69 264.2 234 57.7
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.7e-68 262.7 191 68.6
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.3e-57 227.3 131 81.7
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 8.4e-54 214.5 194 56.7
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 4.6e-52 208.8 110 89.1
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 7.9e-52 208.0 157 66.9
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 6.7e-51 204.9 163 63.2
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.3e-50 202.6 184 58.7
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 4.8e-49 198.7 104 89.4
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 2.5e-45 186.4 143 63.6
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 6.3e-41 171.8 253 41.5
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 2.0e-39 166.8 164 53.7
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-34 149.8 132 58.3
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 9.1e-32 141.4 188 44.7
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 4.2e-29 132.5 86 74.4
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 1.2e-28 131.0 83 73.5
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 3.6e-28 129.4 122 56.6
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 5.3e-24 115.5 116 52.6
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 1.5e-23 114.0 188 41.0
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 5.3e-16 89.0 49 79.6
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 5.3e-16 89.0 49 79.6
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.0e-16 88.6 153 40.5
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.0e-16 88.6 153 40.5
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-14 83.6 43 86.0
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 5.5e-13 79.0 58 65.5
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 9.4e-13 78.2 40 85.0
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 9.4e-13 78.2 40 85.0
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 7.0e-08 62.0 167 30.5
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 9.1e-08 61.6 39 74.4
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 3.5e-07 59.7 44 65.9
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 1.3e-06 57.8 47 59.6
Actinidia29603 Actinidia chinensis HOM05D000367 ORTHO05D002159 2.2e-06 57.0 41 68.3


User provided reference genes

Program Settings