Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 0.0e+00 1674.4 918 100.0
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 4.4e-207 725.7 888 53.3
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 1.4e-200 704.1 888 50.5
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 6.4e-198 695.3 985 46.4
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 3.6e-193 679.5 950 44.4
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 4.0e-192 676.0 964 44.1
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 1.5e-191 674.1 870 45.4
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 4.9e-190 669.1 938 45.4
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 1.6e-188 664.1 892 48.4
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 7.3e-186 655.2 828 47.2
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 3.6e-185 652.9 895 45.6
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 5.3e-184 649.0 828 50.5
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 9.0e-184 648.3 937 44.1
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 1.2e-183 647.9 861 44.7
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 1.3e-182 644.4 952 42.9
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 7.9e-180 635.2 826 48.7
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 1.8e-179 634.0 831 49.2
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 4.8e-177 625.9 981 43.2
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 7.6e-175 618.6 889 45.4
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 4.9e-174 615.9 930 43.8
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 3.2e-173 613.2 854 44.8
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 6.0e-172 609.0 974 43.0
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.9e-171 606.3 889 43.8
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 3.3e-170 603.2 828 48.6
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 1.1e-168 598.2 834 48.1
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 2.4e-168 597.0 931 42.2
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 3.2e-165 586.6 931 42.2
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 2.7e-164 583.6 907 45.5
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 2.7e-164 583.6 898 46.0
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 1.3e-163 581.3 828 47.5
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 3.0e-163 580.1 938 41.2
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 3.9e-163 579.7 835 46.1
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 5.1e-163 579.3 827 44.7
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 1.3e-161 574.7 1025 37.4
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 3.7e-161 573.2 830 47.6
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 5.3e-160 569.3 832 48.7
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 9.0e-160 568.5 998 40.4
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 9.0e-160 568.5 916 45.6
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 2.0e-159 567.4 933 40.7
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 2.6e-159 567.0 839 44.0
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 2.6e-159 567.0 839 44.0
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 1.3e-158 564.7 901 42.4
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 8.5e-158 562.0 830 44.7
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 9.4e-157 558.5 863 42.8
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 2.1e-156 557.4 899 42.7
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 4.6e-156 556.2 893 44.0
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 1.8e-155 554.3 845 47.6
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 3.9e-155 553.1 852 43.0
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 3.9e-155 553.1 829 44.5
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 3.9e-155 553.1 831 43.6
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 5.1e-155 552.7 827 45.6
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.3e-154 549.7 1248 36.8
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 5.7e-154 549.3 1029 39.1
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 2.8e-153 547.0 839 43.5
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.8e-153 546.2 1136 38.9
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 8.2e-153 545.4 933 42.6
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 1.1e-152 545.0 842 47.9
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 1.8e-152 544.3 825 45.1
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 2.4e-152 543.9 972 39.5
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 3.1e-152 543.5 838 43.4
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 1.7e-150 537.7 934 40.1
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 3.9e-147 526.6 829 43.7
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 1.1e-146 525.0 829 44.8
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 4.5e-143 513.1 981 38.0
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 1.0e-142 511.9 968 40.1
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.5e-141 508.1 847 45.6
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.5e-141 508.1 901 44.3
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 8.0e-140 502.3 958 40.0
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 2.2e-137 494.2 877 41.5
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 1.6e-135 488.0 788 44.0
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 3.5e-135 486.9 875 41.3
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 8.5e-134 482.3 832 44.0
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 2.1e-132 477.6 896 38.7
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 3.4e-130 470.3 903 39.6
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 1.0e-126 458.8 833 42.7
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 1.1e-125 455.3 926 36.9
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 1.5e-125 454.9 824 40.5
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 4.7e-124 449.9 873 40.3
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 4.7e-124 449.9 935 35.2
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 1.5e-122 444.9 811 41.4
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 7.5e-122 442.6 887 40.2
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 8.3e-121 439.1 829 38.4
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 2.9e-118 430.6 927 38.1
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.4e-112 411.8 833 39.5
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.2e-111 408.7 826 39.1
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.1e-109 402.1 665 40.2
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 7.3e-109 399.4 788 37.2
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 9.8e-106 389.0 458 52.0
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 5.0e-102 376.7 827 38.7
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.4e-99 368.6 449 52.3
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.0e-99 367.1 492 43.5
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.4e-96 358.6 623 42.2
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 5.4e-96 356.7 724 39.2
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.4e-91 342.0 816 35.7
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 8.9e-91 339.3 299 67.2
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 2.5e-85 321.2 305 62.0
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 8.9e-83 312.8 860 33.0
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 3.6e-76 290.8 425 41.2
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 1.1e-75 289.3 351 45.3
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 9.9e-74 282.7 363 45.7
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.3e-65 255.8 237 59.5
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 1.3e-65 255.8 827 27.4
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 2.1e-60 238.4 243 56.0
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 4.9e-57 227.3 843 28.0
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 6.3e-52 210.3 163 66.3
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.2e-50 206.1 150 71.3
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.8e-49 201.1 191 57.1
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 9.3e-48 196.4 1058 23.5
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.9e-45 188.7 269 40.5
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 2.2e-41 175.3 151 63.6
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 1.2e-39 169.5 126 69.8
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.6e-39 169.1 201 54.7
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 1.3e-36 159.5 485 31.5
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 3.8e-33 147.9 152 54.6
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 2.1e-31 142.1 296 35.1
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.3e-30 138.7 392 31.1
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 2.6e-29 135.2 266 33.1
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 1.3e-28 132.9 238 39.1
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 5.0e-25 120.9 99 59.6
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.6e-23 115.9 217 35.5
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.7e-21 107.5 685 24.1
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 5.3e-19 100.9 78 62.8
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 6.5e-17 94.0 428 26.9
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-15 88.6 228 26.3
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 2.0e-13 82.4 205 32.2
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.4e-11 74.3 451 23.3
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 1.6e-10 72.8 232 28.4
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.9e-08 65.9 302 24.8
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 1.8e-06 59.3 167 29.3


User provided reference genes

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