Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 5.9e-250 867.1 441 100.0
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 6.8e-121 438.3 405 59.5
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 1.9e-115 420.2 364 62.1
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 2.1e-114 416.8 421 56.5
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 3.6e-114 416.0 396 58.6
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 1.7e-111 407.1 408 56.4
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 2.7e-109 399.8 386 58.3
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 6.0e-109 398.7 400 56.8
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 7.8e-109 398.3 391 58.1
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 1.0e-108 397.9 390 57.9
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 3.0e-108 396.4 376 59.6
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 4.3e-107 392.5 400 54.8
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 5.6e-107 392.1 400 57.0
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 3.6e-106 389.4 377 57.0
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.1e-105 387.9 399 55.6
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.3e-105 386.7 391 56.3
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 5.2e-105 385.6 405 55.8
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 5.8e-104 382.1 391 58.3
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 9.8e-104 381.3 391 56.0
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 9.8e-104 381.3 410 54.9
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 4.9e-103 379.0 459 50.1
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 1.4e-102 377.5 347 59.7
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 5.4e-102 375.6 418 53.3
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.6e-101 374.0 396 53.5
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 2.1e-101 373.6 421 53.4
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 3.5e-101 372.9 393 55.0
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 1.9e-99 367.1 363 54.8
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 3.3e-99 366.3 285 65.3
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 3.3e-99 366.3 403 51.9
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 7.3e-99 365.2 353 56.9
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 2.1e-98 363.6 339 60.2
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.8e-98 363.2 422 51.7
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 4.7e-98 362.5 355 56.1
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 1.8e-97 360.5 339 58.1
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 5.2e-97 359.0 288 64.9
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.2e-96 357.8 411 52.1
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 2.0e-96 357.1 364 54.7
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 2.6e-96 356.7 285 64.2
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 7.6e-96 355.1 430 48.6
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 2.9e-95 353.2 389 53.7
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 2.9e-95 353.2 342 54.7
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 4.9e-95 352.4 389 54.2
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 8.3e-95 351.7 390 55.6
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 1.1e-94 351.3 320 59.1
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 4.1e-94 349.4 384 50.8
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 5.4e-94 349.0 395 51.4
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 7.1e-94 348.6 388 52.1
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 9.2e-94 348.2 231 73.2
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 1.6e-93 347.4 408 52.5
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.6e-93 347.4 253 68.8
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 2.7e-93 346.7 388 52.8
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 3.5e-93 346.3 336 55.1
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 7.8e-93 345.1 249 70.7
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 1.0e-92 344.7 477 46.1
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 1.3e-92 344.4 388 50.0
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.0e-92 343.2 389 53.7
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 8.6e-92 341.7 334 58.4
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 1.9e-91 340.5 388 54.6
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 4.3e-91 339.3 407 50.1
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 7.3e-91 338.6 348 53.7
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.2e-90 337.8 253 67.2
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 1.2e-90 337.8 389 51.7
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 1.6e-90 337.4 407 51.6
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 1.6e-90 337.4 325 56.3
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 3.6e-90 336.3 320 58.4
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 4.7e-90 335.9 376 50.8
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 6.2e-90 335.5 271 62.4
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 8.1e-90 335.1 345 52.5
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 1.4e-89 334.3 412 50.7
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 1.4e-89 334.3 412 48.8
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.8e-89 334.0 389 51.4
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 2.4e-89 333.6 391 52.4
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 6.8e-89 332.0 496 44.2
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 1.2e-88 331.3 356 52.0
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.5e-88 330.9 391 49.4
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 3.8e-87 326.2 345 52.5
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 4.9e-87 325.9 357 53.5
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 1.9e-86 323.9 410 48.5
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 2.7e-85 320.1 421 48.0
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 4.6e-85 319.3 389 50.1
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 6.0e-85 318.9 349 53.3
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 8.7e-84 315.1 291 57.7
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.1e-83 314.7 353 51.8
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 5.6e-83 312.4 288 56.2
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 9.6e-83 311.6 354 52.0
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 2.1e-82 310.5 366 52.2
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 6.9e-81 305.4 374 47.6
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 1.5e-80 304.3 253 60.1
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 9.3e-78 295.0 313 51.4
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 4.6e-77 292.7 227 63.4
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 1.0e-76 291.6 296 54.4
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 7.3e-75 285.4 375 48.3
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 2.6e-72 276.9 334 46.1
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 3.8e-71 273.1 341 45.2
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 1.0e-68 265.0 308 48.7
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 3.4e-64 250.0 361 40.7
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 1.3e-60 238.0 205 56.1
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 5.1e-60 236.1 246 50.8
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 1.3e-58 231.5 205 58.5
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 1.7e-55 221.1 222 48.6
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 2.2e-55 220.7 244 48.0
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 6.5e-55 219.2 171 65.5
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 8.4e-55 218.8 317 40.7
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 5.0e-47 193.0 166 60.8
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 1.1e-46 191.8 201 53.2
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 4.2e-46 189.9 183 54.1
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 1.8e-41 174.5 217 44.7
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 5.0e-39 166.4 124 62.9
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 3.2e-38 163.7 133 57.1
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 4.7e-37 159.8 238 44.5
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 5.7e-35 152.9 132 56.8
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 5.0e-31 139.8 111 63.1
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.5e-30 137.5 350 33.1
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 4.7e-29 133.3 165 39.4
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 8.2e-26 122.5 190 35.3
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 1.2e-24 118.6 88 64.8
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 4.0e-20 103.6 62 79.0
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.1e-17 94.0 64 65.6
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 1.7e-15 88.2 55 76.4
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 1.5e-14 85.1 50 78.0
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 2.5e-14 84.3 96 42.7
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 9.4e-14 82.4 52 76.9
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.3e-12 77.8 52 69.2
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.3e-12 77.8 52 69.2
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 3.0e-12 77.4 51 68.6
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 1.2e-11 75.5 46 76.1
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 9.8e-11 72.4 50 66.0
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 1.1e-09 68.9 113 39.8
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 3.5e-08 63.9 106 35.8
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 4.5e-08 63.5 164 33.5
Zm00001eb138540 Zea mays HOM05D005646 ORTHO05D006828 6.6e-07 59.7 92 39.1
COL.COLO4_26597 Corchorus olitorius HOM05D000001 ORTHO05D010004 7.3e-06 56.2 31 77.4


User provided reference genes

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