Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 2.0e-44 182.2 101 100.0
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 5.5e-26 120.9 84 79.8
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 3.6e-25 118.2 84 77.4
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 6.1e-25 117.5 84 77.4
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 6.1e-25 117.5 84 76.2
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.0e-24 116.7 84 76.2
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 1.0e-24 116.7 84 75.0
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.8e-24 115.9 84 75.0
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 3.0e-24 115.2 86 73.3
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 3.9e-24 114.8 84 75.0
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 5.1e-24 114.4 84 72.6
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 8.8e-24 113.6 88 70.5
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 1.1e-23 113.2 83 75.9
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 1.1e-23 113.2 83 77.1
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 2.0e-23 112.5 83 75.9
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 2.0e-23 112.5 83 73.5
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 2.5e-23 112.1 84 73.8
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.3e-23 111.7 84 75.0
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 3.3e-23 111.7 86 69.8
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 4.3e-23 111.3 84 70.2
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 4.3e-23 111.3 86 69.8
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 4.3e-23 111.3 86 69.8
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 5.7e-23 110.9 86 69.8
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 5.7e-23 110.9 83 72.3
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 1.3e-22 109.8 83 72.3
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 2.2e-22 109.0 84 70.2
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 2.2e-22 109.0 84 70.2
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 2.8e-22 108.6 84 69.0
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 2.8e-22 108.6 84 69.0
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 3.7e-22 108.2 84 71.4
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 3.7e-22 108.2 83 73.5
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 3.7e-22 108.2 83 73.5
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 3.7e-22 108.2 83 72.3
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 4.8e-22 107.8 84 69.0
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.8e-22 107.8 84 72.6
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 4.8e-22 107.8 84 72.6
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 4.8e-22 107.8 83 71.1
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 1.1e-21 106.7 84 69.0
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 1.1e-21 106.7 84 67.9
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 1.1e-21 106.7 83 72.3
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 1.1e-21 106.7 84 69.0
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 1.8e-21 105.9 94 62.8
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 1.8e-21 105.9 83 72.3
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 2.4e-21 105.5 94 62.8
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 2.4e-21 105.5 94 62.8
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 2.4e-21 105.5 84 71.4
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 2.4e-21 105.5 93 62.4
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 3.1e-21 105.1 90 65.6
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 3.1e-21 105.1 84 67.9
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 4.1e-21 104.8 83 68.7
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 5.3e-21 104.4 84 69.0
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 5.3e-21 104.4 84 66.7
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 5.3e-21 104.4 84 66.7
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 5.3e-21 104.4 94 62.8
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 6.9e-21 104.0 84 67.9
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 6.9e-21 104.0 88 63.6
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 6.9e-21 104.0 88 63.6
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 6.9e-21 104.0 88 63.6
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 6.9e-21 104.0 83 69.9
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 6.9e-21 104.0 83 69.9
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 6.9e-21 104.0 83 69.9
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 6.9e-21 104.0 86 65.1
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 9.1e-21 103.6 94 61.7
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 9.1e-21 103.6 84 66.7
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 9.1e-21 103.6 94 61.7
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 9.1e-21 103.6 83 68.7
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.5e-20 102.8 83 66.3
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 2.0e-20 102.4 84 66.7
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 3.4e-20 101.7 84 69.0
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 3.4e-20 101.7 84 66.7
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 4.5e-20 101.3 84 66.7
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 4.5e-20 101.3 87 65.5
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 4.5e-20 101.3 83 67.5
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 4.5e-20 101.3 84 64.3
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 4.5e-20 101.3 84 64.3
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 5.9e-20 100.9 84 69.0
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 7.7e-20 100.5 84 69.0
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 7.7e-20 100.5 83 67.5
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 7.7e-20 100.5 84 67.9
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 7.7e-20 100.5 86 61.6
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.7e-19 99.4 84 63.1
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 1.7e-19 99.4 86 66.3
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 3.8e-19 98.2 84 66.7
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 3.8e-19 98.2 84 66.7
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 5.0e-19 97.8 83 67.5
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 5.0e-19 97.8 83 67.5
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 6.5e-19 97.4 83 67.5
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.9e-18 95.9 87 62.1
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.9e-18 95.9 80 65.0
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 2.5e-18 95.5 85 65.9
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 3.2e-18 95.1 83 66.3
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 4.2e-18 94.7 78 66.7
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 4.2e-18 94.7 84 65.5
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 5.5e-18 94.4 92 55.4
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 5.5e-18 94.4 86 60.5
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 7.2e-18 94.0 83 61.4
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 7.2e-18 94.0 86 58.1
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 9.4e-18 93.6 76 71.1
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 9.4e-18 93.6 87 60.9
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 1.6e-17 92.8 83 62.7
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.1e-17 92.4 92 54.3
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.7e-17 92.0 84 65.5
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 3.6e-17 91.7 83 62.7
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 3.6e-17 91.7 98 51.0
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 4.7e-17 91.3 83 59.0
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 4.7e-17 91.3 100 58.0
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 7.9e-17 90.5 83 59.0
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 1.0e-16 90.1 87 58.6
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.8e-16 89.4 92 53.3
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 1.8e-16 89.4 84 57.1
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 2.3e-16 89.0 92 52.2
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 2.3e-16 89.0 83 61.4
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.0e-16 88.6 77 61.0
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 3.9e-16 88.2 70 68.6
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 8.8e-16 87.0 84 56.0
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 2.0e-15 85.9 86 57.0
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 2.0e-15 85.9 98 50.0
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 2.0e-15 85.9 81 54.3
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 2.6e-15 85.5 86 54.7
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 2.6e-15 85.5 80 60.0
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 3.3e-15 85.1 98 50.0
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 4.4e-15 84.7 105 53.3
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 4.4e-15 84.7 105 53.3
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 4.4e-15 84.7 86 54.7
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 5.7e-15 84.3 86 55.8
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 1.3e-14 83.2 84 54.8
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 2.2e-14 82.4 86 53.5
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 3.7e-14 81.6 80 56.2
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 3.7e-14 81.6 86 54.7
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 4.8e-14 81.3 86 52.3
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.3e-14 80.9 99 46.5
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 6.3e-14 80.9 86 55.8
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 8.2e-14 80.5 133 42.9
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 1.4e-13 79.7 64 65.6
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.8e-13 79.3 99 46.5
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.8e-13 79.3 99 46.5
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 1.8e-13 79.3 79 57.0
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 3.1e-13 78.6 76 55.3
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 3.1e-13 78.6 81 54.3
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 4.1e-13 78.2 77 61.0
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 4.1e-13 78.2 88 51.1
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 4.5e-12 74.7 80 53.8
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 5.9e-12 74.3 84 54.8
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 1.0e-11 73.6 84 50.0
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.3e-11 73.2 84 50.0
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 2.9e-11 72.0 80 56.2
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 3.8e-11 71.6 74 56.8
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 5.0e-11 71.2 86 48.8
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 5.0e-11 71.2 53 71.7
QL01p011704 Quercus lobata HOM05D003660 ORTHO05D003415 6.5e-11 70.9 48 75.0
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 1.5e-10 69.7 86 47.7
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 1.9e-10 69.3 103 44.7
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.9e-10 69.3 80 51.2
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 3.2e-10 68.6 89 48.3
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 3.2e-10 68.6 77 54.5
BraA02t05648Z Brassica rapa HOM05D003660 ORTHO05D003415 4.2e-10 68.2 53 67.9
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 4.2e-10 68.2 74 51.4
SGA_v2.0_scaffold177G39452 Striga asiatica HOM05D003660 ORTHO05D003415 7.2e-10 67.4 79 49.4
Ca_19453_v3 Cicer arietinum L. HOM05D003660 ORTHO05D003415 1.2e-09 66.6 52 65.4
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.2e-09 66.6 83 45.8
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.6e-09 66.2 87 39.1
TPR.G26429 Trifolium pratense HOM05D003660 ORTHO05D003415 2.7e-09 65.5 53 62.3
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 3.6e-09 65.1 89 42.7
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 4.7e-09 64.7 86 45.3
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 8.0e-09 63.9 85 43.5
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 8.0e-09 63.9 90 40.0
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.8e-08 62.8 66 56.1
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.3e-08 62.4 66 54.5
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 2.3e-08 62.4 90 46.7
GSVIVG01036067001 Vitis vinifera HOM05D003660 ORTHO05D003415 2.3e-08 62.4 43 74.4
EL10Ac7g16326 Beta vulgaris HOM05D003660 ORTHO05D003415 3.0e-08 62.0 42 76.2
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 4.0e-08 61.6 66 54.5
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 5.2e-08 61.2 89 41.6
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 5.2e-08 61.2 63 55.6
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 8.8e-08 60.5 67 53.7
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.1e-07 60.1 66 53.0
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 1.5e-07 59.7 90 40.0
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 4.4e-07 58.2 90 37.8
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 7.5e-07 57.4 90 40.0
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 7.5e-07 57.4 91 39.6
TPR.G23220 Trifolium pratense HOM05D003660 ORTHO05D003415 1.7e-06 56.2 55 54.5
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 2.2e-06 55.8 108 35.2
Pp3c15_12320 Physcomitrium patens HOM05D003660 ORTHO05D003415 2.8e-06 55.5 80 41.2
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 3.7e-06 55.1 90 36.7


User provided reference genes

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