Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 5.3e-41 170.6 88 100.0
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 1.4e-14 82.8 52 75.0
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.4e-14 82.8 59 71.2
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 3.2e-14 81.6 59 66.1
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 5.5e-14 80.9 51 76.5
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 7.2e-14 80.5 59 71.2
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 1.6e-13 79.3 51 72.5
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.6e-13 79.3 51 76.5
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 1.6e-13 79.3 51 76.5
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 2.7e-13 78.6 54 72.2
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 3.6e-13 78.2 54 70.4
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 3.6e-13 78.2 52 75.0
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 4.6e-13 77.8 59 69.5
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 4.6e-13 77.8 59 62.7
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 4.6e-13 77.8 47 76.6
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 6.1e-13 77.4 52 71.2
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 6.1e-13 77.4 51 72.5
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 6.1e-13 77.4 59 69.5
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 7.9e-13 77.0 77 55.8
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 7.9e-13 77.0 59 69.5
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 1.0e-12 76.6 54 68.5
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 1.0e-12 76.6 59 71.2
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 1.4e-12 76.3 59 66.1
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 1.4e-12 76.3 54 70.4
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 2.3e-12 75.5 51 72.5
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 3.0e-12 75.1 59 64.4
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 3.9e-12 74.7 50 74.0
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 5.1e-12 74.3 51 64.7
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 6.7e-12 73.9 74 52.7
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 6.7e-12 73.9 74 52.7
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 6.7e-12 73.9 58 58.6
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 6.7e-12 73.9 60 63.3
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 6.7e-12 73.9 57 59.6
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 8.8e-12 73.6 61 60.7
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.5e-11 72.8 64 64.1
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.0e-11 72.4 51 68.6
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 2.5e-11 72.0 59 55.9
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 3.3e-11 71.6 61 55.7
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 3.3e-11 71.6 65 55.4
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 4.3e-11 71.2 77 49.4
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 5.7e-11 70.9 66 53.0
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 7.4e-11 70.5 53 64.2
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 9.7e-11 70.1 52 69.2
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 1.3e-10 69.7 79 49.4
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 1.3e-10 69.7 52 71.2
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 1.7e-10 69.3 81 53.1
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.2e-10 68.9 49 71.4
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 2.2e-10 68.9 52 69.2
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 2.2e-10 68.9 52 69.2
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 2.2e-10 68.9 52 69.2
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 2.2e-10 68.9 76 51.3
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 2.2e-10 68.9 51 62.7
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 2.2e-10 68.9 51 60.8
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 2.8e-10 68.6 55 65.5
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.8e-10 68.6 57 57.9
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.8e-10 68.6 57 57.9
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 2.8e-10 68.6 51 60.8
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 2.8e-10 68.6 61 57.4
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 3.7e-10 68.2 52 69.2
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 3.7e-10 68.2 76 48.7
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 6.3e-10 67.4 55 61.8
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 6.3e-10 67.4 55 61.8
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 6.3e-10 67.4 60 58.3
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 8.2e-10 67.0 53 69.8
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 8.2e-10 67.0 47 66.0
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 1.4e-09 66.2 59 62.7
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 1.4e-09 66.2 46 69.6
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 1.4e-09 66.2 47 66.0
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 1.8e-09 65.9 55 65.5
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 2.4e-09 65.5 52 67.3
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 3.1e-09 65.1 56 50.0
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 3.1e-09 65.1 53 58.5
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 4.1e-09 64.7 46 65.2
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 6.9e-09 63.9 74 48.6
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 9.1e-09 63.5 54 59.3
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 1.2e-08 63.2 55 58.2
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.2e-08 63.2 51 54.9
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.2e-08 63.2 51 54.9
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 1.2e-08 63.2 51 54.9
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 1.5e-08 62.8 59 50.8
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 1.5e-08 62.8 73 49.3
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 1.5e-08 62.8 59 47.5
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 2.0e-08 62.4 57 50.9
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 2.0e-08 62.4 57 50.9
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 7.7e-08 60.5 54 53.7
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 1.0e-07 60.1 48 62.5
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 2.2e-07 58.9 57 47.4
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 8.5e-07 57.0 49 49.0
Ciclev10029903m.g Citrus clementina HOM05D005386 ORTHO05D006981 4.2e-06 54.7 39 71.8


User provided reference genes

Program Settings